Pseudomonas abietaniphila: ABDX87_24220
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Entry
ABDX87_24220 CDS
T11725
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
pabn Pseudomonas abietaniphila
Pathway
pabn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pabn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABDX87_24220 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pabn03400
]
ABDX87_24220 (uvrB)
DNA repair and recombination proteins [BR:
pabn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABDX87_24220 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ABDX87_24220 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
Viral_helicase1
Cauli_AT
Motif
Other DBs
NCBI-ProteinID:
XAW92589
LinkDB
All DBs
Position
5519118..5521133
Genome browser
AA seq
671 aa
AA seq
DB search
MSEFQLVTRFEPAGDQPTAIRQLVEGIDAGLSHQTLLGVTGSGKTFSIANVIQQVQRPTL
VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ
MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLRMVLHVDRGDKLDQRALLRRLADLQY
TRNDMDFARATFRVRGDVIDIFPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRF
TFYPKSHYVTPRETLLDAMEGIKVELQERLEYLRGANKLVEAQRLEQRTRFDLEMILELG
YCNGIENYSRYLSGRPAGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETL
VEYGFRLPSALDNRPMRFDEWESVSPQTIFVSATPGPYEGEHAGRVVEQVVRPTGLVDPQ
IEIRPALTQVDDLLSEIHKRVALEERVLVTTLTKRMSEDLTDYLADHGVRVRYLHSDIDT
VERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA
ARNLNGRAILYADRITGSMERAIGETERRRDKQIAFNLENGITPKGVFKDVTDIMEGATV
PGSRSKKRKGMAKAAEENAKYEAELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQMRDE
ITKLRERLLAV
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagtttcagctcgttacccgttttgagccggccggtgaccaaccgacggcgatc
cgccaactggtcgagggcatcgacgcggggctgtcgcaccagaccctgctgggggtgacc
ggttcgggcaagaccttcagcattgccaacgtcatccagcaggtgcagcgcccgacgctg
gtgctggcgccgaacaagacgctggccgctcaactgtatggcgaattcaaggcgttcttc
cccaacaatgccgttgaatacttcgtgtcctactacgactactaccagccggaagcctat
gtgccgtcgtccgacaccttcatcgagaaggacgcgtcgatcaacgaccacatcgagcag
atgcggttgtcggccaccaaggcgttgctggagcgcaaggacgccatcatcgtcacgacc
gtgtcgtgcatctacggtctgggcagtccggaaacctacctgcgcatggtgcttcacgtc
gaccgtggcgacaaactcgaccagcgcgccttgctgcgccgcctggccgacctgcaatac
acccgcaacgacatggactttgcccgggcgaccttccgcgtgcgcggtgacgtgatcgac
attttcccggcggaatcggacctggaagccatccgcatcgagctgttcgacgacgaagtc
gagagcctgtcggccttcgacccgttgaccggcgaagtcatccgcaaactgccgcgcttt
accttctacccgaagagccactacgtcacgccacgggaaaccctgctggacgcgatggaa
gggatcaaggtcgagttgcaggagcgcctggaatacctgcgcggcgccaacaaactggtg
gaagcgcaacgtctggagcaacgcacccggttcgacctggagatgatcctggagctgggc
tactgcaacggcatcgaaaactactcgcgctacctgtcgggtcgtcctgccggggcgccg
ccgccgactctctacgactacctgccgcctgacgcactgctggtgatcgacgaatcccac
gtcagcgtgccgcaggtcggcgccatgtataagggcgaccgctcgcgcaaggaaacgctg
gtggaatacggcttccggctgccgtcggcgctggacaaccggccgatgcgcttcgatgaa
tgggaaagcgtcagcccgcagaccattttcgtatctgcgacaccgggcccgtacgaaggc
gagcacgccgggcgagtggtcgagcaggtggtgcgtccgaccggtctggtcgacccgcag
atcgagattcgtccggccctgacgcaggtggacgatctgctgtcagagatccacaaacgc
gtggcgctggaagagcgggtgctggttaccacgctgaccaagcgcatgtccgaggacctg
accgattacctggccgaccacggcgtgcgggtgcgttacctgcactcggacatcgacacc
gtggaacgcgtcgagattatccgtgacctgcgtctgggcacctttgatgtgctggtgggg
atcaacctgctgcgcgagggcctggacatgcccgaggtgtccctcgtggcgattctcgac
gccgacaaggaaggcttcctgcgttccgagcgttcgctgatccagaccattggccgcgcg
gcgcgtaacctcaatgggcgggcaatcctgtacgccgaccgcatcaccggctccatggag
cgggcaattggcgaaaccgaacgccgtcgagacaagcagatcgccttcaacctggaaaac
ggcatcaccccgaaaggcgtgttcaaggacgtcaccgacatcatggaaggcgccaccgtg
cccggctcgcgcagcaagaagcgcaagggcatggccaaagccgccgaagagaacgccaag
tacgaagccgagctgcgttcgccgagcgagatcaccaagcgcattcgtcaactggaagag
aagatgtaccagctggcccgcgacctggagttcgaagccgcggcacagatgcgcgacgaa
atcaccaagcttcgcgagcggttgctcgcagtttga
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integrated database retrieval system
