Polycladomyces abyssicola: JIR001_00710
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Entry
JIR001_00710 CDS
T07192
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pabs
Polycladomyces abyssicola
Pathway
pabs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pabs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JIR001_00710 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pabs03400
]
JIR001_00710 (mfd)
Enzymes [BR:
pabs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JIR001_00710 (mfd)
DNA repair and recombination proteins [BR:
pabs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JIR001_00710 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
BCU80288
UniProt:
A0A8D5UDG7
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All DBs
Position
78494..82039
Genome browser
AA seq
1181 aa
AA seq
DB search
MKPLIHLFREDKDFQSTVEGLRMGLSEQMVAGLTGTARMLYVASLYREIGQPVMLVTHNL
NQAQKAAEDLYELLPKEEVMLYPANELVTTEIALAGHETLGERVDVLSRLSRGFTGVFVV
PFAGLRKLFPPQATVKASHVRLKVGEERPMDPLVDRLVKIGYERVEMVEKPGEFSVRGGI
LDVYPVTFQDPVRMEWFGDELDSIRPFSATDQRSYDKWEEVLIPPARELFADAERLYQAG
EKAAGLLEERLSAVKDPSLKKKLAEGIGWEIEQLKSGQWFTGIYKYITLIYPDCQSLLDY
MPKDTVLVLDEPARITETARQMEREEGEWQTALLQQGEFLPQLKISHSYEECLFRVKHPR
IALSLFMRQVQGFQPQNVVQFICRSMQQFHGQMHVLKTEWERWQKAKYRVIFTASSEERA
ERLKRVLADYGMELEHDSVDAPPFAGRPVVRITSLQNGFELSAIKLAVVTEGEVFTQKQR
RMRRPSKMSHAEKIKDYQELQPGDYVVHVNHGIGRYAGIETLNVGGMHKDYLLIQYAGND
KLYVPIDQIDQVQKYVGAEEKTPKVYSLGGSEWSKVKNKVRSSVQDIAQDLIKLYAKRQA
AKGFAFSPDTPYQREFDAMFPYEETPDQERSIREIKADMEKPQPMDRLLCGDVGYGKTEV
AIRAAFKATMDGKQVAVLVPTTILAQQHYETFKERFAGFPVEIRVLSRFRTRKEQKETIE
GVKNGTVDIVIGTHRLLSKDVQFKDLGLLIIDEEQRFGVKHKERIKQMKHNIDVLTLTAT
PIPRTLHMAMMGVRDLSVIETPPENRFPVQTYVLEYSAALVREAIERELARDGQVYFLYN
QVQGIEQMAEQIRALVPEARVAVAHGQMPETELERVMLDFLDGEYDVLVSTTIIETGVDI
PNVNTLIIYDADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTETAEKRLQAIKEFT
ELGSGFKIAMRDLAIRGAGNLLGAEQHGHIASVGFELYSQMLKEAIAELKGTEEQEQPLE
PQIELNADAYLPSDYIPDEKQKIELYKKIRAIQTLEEARDLEEEIEDRFGDLPQPVQTLL
RIARIRAYALKYGIEEIQQKGQEITIRLHPDQNQVVDGQRLFRLAQEFPGRIRLSSGQRI
GIIFKTAGLSPADALEMVERFLIKYETVPKTKGAIQNAANE
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
gtgaagcccttgatacacctttttcgggaggacaaggattttcagtccacagtggaagga
ctgagaatggggttgtccgagcagatggtcgcgggactgacggggaccgcgcggatgtta
tatgtggcttccctgtatcgtgagatcggacagccagtgatgctggtcacgcacaacttg
aaccaagcgcaaaaagcggcggaagatttatatgagttgttgccgaaagaagaagtgatg
ttgtatccagccaatgaattggtcacgacggaaattgcactcgccggacacgagacgctc
ggagaacgggtagatgtgttgtcccgtctctcgcgcggatttaccggcgtttttgtcgtg
ccgtttgccggattgcgcaagctgtttccgcctcaggccacggtaaaggccagtcacgtc
cgattgaaagtgggagaggaacggccgatggacccgttggtggaccgactggtgaagatc
ggttacgaacgggtggagatggtggagaagcctggtgaattcagcgttcgtggcggcatt
ttggacgtgtatccggttacattccaggacccggtccgcatggagtggtttggagacgaa
ctggattcgatccggccgttttccgcaacggatcaacgctcctacgacaaatgggaagag
gtgttgatcccgcctgcccgtgaattgttcgccgatgccgaaagactgtatcaggcgggt
gaaaaagcggcggggttactggaggagcgtctttcggctgtcaaggacccctcgctcaaa
aagaaactcgctgaaggaatcggctgggaaatcgaacagctgaaatcgggacaatggttt
accggcatctataaatatatcaccctcatctatccggattgtcagagtttactggattat
atgcccaaagacaccgtgctggtgttggacgaaccggcccggatcacggagactgcccgt
cagatggagcgggaagaaggggaatggcagactgctctgttgcagcagggagagtttctg
cctcagctaaaaatttcccactcttacgaggaatgcctgtttcgcgtgaaacatccgcgg
atcgcgctgtcgttgtttatgcggcaggtgcagggattccaaccgcaaaacgtcgtgcag
ttcatctgtcggagcatgcaacagttccacggacaaatgcatgtgctcaaaacagagtgg
gagcggtggcaaaaggccaagtatcgcgtcattttcacggcgagcagcgaggagcgggcc
gaacggttgaagcgggtgctggccgattacgggatggagctggagcatgacagcgtggat
gcccctccgttcgccggtcgacccgttgtgcgtatcacctctttgcaaaacggatttgaa
ctgagtgcgatcaagctggctgtggtgaccgaaggcgaggtatttacccagaaacagcgc
cggatgcgtcgcccctccaaaatgagccacgccgaaaagatcaaggattaccaagagctc
caacccggtgattatgtggttcacgtcaaccacggcatcggtcggtatgcggggatcgag
acgctcaacgtgggcgggatgcacaaggattatctcttgatccaatacgccggcaacgac
aagctgtacgttccgatcgatcagatcgaccaggtgcagaaatatgtcggcgcagaggaa
aaaacgcccaaagtgtacagtttgggtggcagcgagtggagcaaggtcaaaaacaaagta
cgctcgtctgtgcaagacatcgcccaagatctgatcaaactgtacgccaaacggcaggcg
gccaagggctttgctttctccccggacaccccctatcaacgggaattcgacgcgatgttc
ccgtatgaggagacacctgatcaggaacggtcgatccgcgagatcaaggcggatatggag
aagccccagccgatggatcgactgttgtgcggtgatgtgggttacgggaagacggaagtg
gccatccgcgccgcatttaaagcgacgatggacggtaaacaggtggcggtgctggtaccc
accaccattttggcgcaacagcactatgagacgttcaaggagcggtttgccggttttccg
gtggaaatccgcgttctgagcaggttccgcacgcgcaaggagcaaaaagagacgatcgaa
ggtgtcaaaaacggtacggtcgacatcgtgatcggtacacaccggctgttgtccaaggac
gtgcagttcaaggatctgggtcttttgatcatcgacgaagaacagcggttcggcgtcaaa
cacaaagagcggatcaaacagatgaagcacaacatcgacgtgctcacgctgacggccacc
ccgattccgcgcaccttgcacatggcgatgatgggagtacgcgatttgtccgtcattgaa
acgccgccggaaaaccgtttccccgtgcagacgtatgttctcgagtattccgccgcatta
gtgcgggaagcgatcgaacgggagcttgcgcgtgacgggcaggtatacttcctctacaac
caggtgcagggaatcgagcaaatggcggaacaaatccgggcgttggtgccggaagcgcgc
gtggccgtcgcacacgggcaaatgcccgaaacggaactggagcgcgttatgctggatttc
ttggacggggaatacgacgtgctcgtcagcaccacaatcatcgagacaggagtggacatc
cccaacgtcaacacgctgatcatctacgatgcggacaagatgggcttgtcgcagctttac
cagctgcgcggtcgtgtcggtcgttccaatcggatcgcctacgcctatttcacttatcag
cgggacaaggtgctgaccgagacggcggaaaagcgattgcaagcgatcaaggagtttacc
gaactgggttctggtttcaaaatcgccatgcgggatttggcgattcgcggtgcggggaat
cttctgggggctgaacagcatgggcatatcgccagtgtcggatttgaattgtactctcag
atgctcaaagaagcgatcgccgaattgaaaggcacggaagagcaggaacagccgctggag
ccgcagatcgaactgaatgccgacgcctatctgccttcggattacattccggacgagaaa
caaaagatcgagctgtacaaaaagatccgagccatacaaacattggaagaagcgcgtgat
ctcgaagaagagatcgaagaccgattcggggatttgcctcaaccggtgcaaaccctgttg
cgcatcgcccggattcgggcttacgccttgaaatacgggattgaggagattcagcagaag
ggacaggaaatcaccatccgcctgcatccggatcaaaaccaggtggtggatggacaacgc
ctgttccgactggcacaggagtttccgggacgcatccgcctgtcgtctgggcagcgaatc
ggcatcatcttcaagaccgcgggcctgtctccggccgacgcgctggaaatggtggagcgt
tttctgataaaatatgaaacggttcccaaaacgaaaggagcaattcaaaatgcggcgaat
gaataa
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integrated database retrieval system
