Polycladomyces abyssicola: JIR001_01660
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Entry
JIR001_01660 CDS
T07192
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pabs
Polycladomyces abyssicola
Pathway
pabs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pabs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JIR001_01660 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pabs03021
]
JIR001_01660 (rpoB)
03400 DNA repair and recombination proteins [BR:
pabs03400
]
JIR001_01660 (rpoB)
Enzymes [BR:
pabs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JIR001_01660 (rpoB)
Transcription machinery [BR:
pabs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JIR001_01660 (rpoB)
DNA repair and recombination proteins [BR:
pabs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JIR001_01660 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
BCU80383
UniProt:
A0A8D5UCV8
LinkDB
All DBs
Position
173826..177380
Genome browser
AA seq
1184 aa
AA seq
DB search
MAGKLVQYGRRQRRSYARINEVLELPNLIEIQQRSYQWFLEEGLREMFQDISPIEDFTGN
LVLEFIDYSLGEPKYSVEECKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTE
TGTFIINGAERVIVSQLVRSPSVYYSTKVDKNGKPAYTATVIPNRGAWLEYETDAKDILY
VRIDRTRKIPVTVLLRALGFSTDAEILELLGDDEYVRNTLDKDNTGSTEKALIEIYERLR
PGEPPTADNAKSLLYSRFFDPKRYDLASVGRYKMNKKLHIKNRLLNQRLAEPIVDPETGE
IIAEAGQVIDRRVLNKILPLLEKEDGLGWEEHTVRGGVPEDGTVRLQSVKIFSPVEDGKV
IKVISNGNVDSSVKHITPADIVASINYFINLLHGVGSTDDIDHLGNRRLRSVGELLQNQF
RIGLSRMERVVRERMSIQDANAITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAEL
THKRRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTYARVNEY
GFIETPYRKVDPDTHVVTDEIVYLTADEEDNYYIAQANEELDEEGRFVNEQIIVRYKDEH
LIVPRERVDFMDVSPKQVVSVATACIPFLENDDSNRALMGSNMQRQAVPLLKPEAPFIGT
GMEYKAARDSGVMVLAKRPGVVERVTADEIWVRHEEEVDGKLVKGDLDKYKLIKFQRSNQ
GTCINQRPIVKVGDRVQKGDTLADGPSTEQGELALGRNVLVAFMTWEGYNYEDAILLSEK
LVKEDVYTSIHIEEYECEARDTKLGPEEITRDIPNVGEDALKNLDERGIIRIGAEIKAGD
ILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGTDGIVVDVKVFTRENGDE
LPPGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVIARVLPEEDMPFLPDGTPVEVVLNPL
GVPSRMNIGQVLEVHLGMAAKAMGLHMATPVFDGATEQDVFETLKEAGLPEDGKTILYDG
RTGEPFENRVTVGVMYMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENVPEPGVPESFKVLIKELQSLGM
DVKILSGDEQEIEIREIDEEDEPANDRLGFDLDSGEGEKKSSSS
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggcaaacttgtccaatatggtcggcgacagcgcagaagttatgcgaggatcaac
gaggttctggaactgcccaacctgattgagattcagcaacggtcgtaccagtggttcttg
gaagagggactgcgcgaaatgttccaggacatctcgccgatcgaagatttcaccggaaac
ttggtcttggagtttattgactacagtctgggtgagcccaagtattcggtcgaagagtgc
aaggaacgggatgttacttatgctgctccgcttcgtgtaaaagtgcgtctcatcaataag
gagacgggcgaagtgaaggagcaggaagtgttcatgggtgatttcccgctgatgacggaa
acgggaacgttcatcatcaacggggccgaacgggtcatcgttagccagctggtccgttcg
ccgagtgtctactacagcaccaaagtggataaaaacggaaaacctgcatacaccgccaca
gtgattccaaatcgtggtgcttggctggagtacgaaaccgatgccaaagacatcctctat
gtccggatcgaccgtacccggaagatccctgtgacggtgcttttgcgtgccctcggtttc
agtactgatgccgagattttggaactcttgggcgatgacgaatacgtacgcaatacgttg
gacaaagacaacaccggttcaacggaaaaagcgctgatcgaaatctacgaacgtttgcgt
ccgggtgaacctccgactgcggacaacgcgaagagcctcttgtattctcgcttcttcgac
cccaaacgctatgatttggcgagtgtgggtcgctataagatgaacaagaagctgcatatc
aaaaatcgcctcctcaaccaacggttggcggagccgatcgtcgatcccgaaaccggtgag
atcattgcggaagccgggcaggtgatcgaccgtcgtgtgctcaacaaaattctgccgctt
ttggagaaagaagacggtctcggttgggaggaacacaccgttcgcggtggggtgccggag
gacgggaccgtacgactgcaatcggtcaagatcttctctcctgtagaagacggcaaggtg
atcaaggtcatctccaacggtaatgtcgattcgtcggtgaaacacatcaccccggccgat
atcgtcgcctcaatcaactactttatcaacctgctccacggtgtgggcagcacggacgat
attgaccacctggggaaccggcgtttgcgttctgtcggcgagctgctgcaaaaccagttc
cgtattggtttgtccaggatggaacgggtggttcgcgagcggatgtcgattcaggatgcc
aatgccattacaccgcaggcgttgatcaatatccgcccggtgatcgcatcgatcaaggaa
ttcttcggcagcagccagttgtcgcaattcatggaccagaccaacccgttggccgaactg
acgcacaaacggcgtctgtccgcgctgggaccgggtggactgacccgggaacgcgccggt
ttcgaggtgcgggacgttcaccactcgcactacggccggatgtgtccgatcgaaacgccg
gagggtcccaacatcgggctgatcaactcgctgtctacctatgcacgggtgaacgaatac
gggtttatcgaaactccctatcgcaaagtggacccggatacgcacgtggtcacagacgag
atcgtgtatctgacggccgacgaagaggacaactactatatcgcacaggccaacgaggaa
ttggatgaagaagggcgcttcgtcaatgagcagattattgtccgttacaaagacgagcat
ttgattgttcctcgtgagcgggtcgacttcatggacgtatcgcccaaacaggtggtctct
gtcgcgacggcgtgtattccgttcctggagaacgacgactccaaccgggcgctgatgggg
tccaacatgcagcgtcaagccgtgccgctgctgaagccggaagcgccgttcatcggtacg
gggatggaatacaaagcggcccgtgactcgggtgtgatggttctggcgaaacgtccgggc
gtcgtcgagcgggtcaccgcggacgaaatctgggttcgccacgaagaagaagtggacggt
aagctggtaaaaggcgacctggataaatacaagctcatcaagttccaacgttccaaccaa
gggacctgcatcaaccagcgcccgatcgtcaaggtgggcgaccgtgtgcaaaaaggcgac
acgttggccgacggtccttccaccgaacaaggggaattggcgttgggccgcaacgtgttg
gttgcttttatgacatgggaagggtacaactacgaagacgccattttgctcagtgagaag
ttggtgaaggaggacgtctacacctccattcacattgaggaatacgagtgtgaagcccgc
gacaccaaactggggcctgaagaaatcacccgcgacatccccaacgtcggagaagatgcg
ctcaagaatttggatgagcgtggcatcatccgcattggggcagaaatcaaagcgggggat
atcctcgtcggaaaagtaacgcccaaaggtgtgaccgaactgacggccgaagagcggctg
cttcacgccatcttcggggaaaaggcccgcgaggtgcgggatacgtccctgcgtgtaccg
cacggcacggatgggatcgtcgttgacgtcaaggtcttcactcgcgaaaacggcgacgaa
ctgcccccgggagtcaaccaattggtgcgcgtctacattgcgcagaaacggaagatttcc
gaaggggacaaaatggcgggacgtcacggaaacaaaggggttattgcccgcgttctgccg
gaggaagacatgccgttcttgccggacggaaccccggtggaagtcgttttgaacccgctc
ggcgtgccgtcgcggatgaacatcggtcaggtgctggaagtgcacttgggaatggcggcc
aaagcgatgggcctgcacatggcaacaccggtgttcgacggtgcgacggagcaggatgtg
ttcgaaacgctgaaagaagcgggattgcctgaagacggaaaaaccatcctttacgacggg
cgcacgggtgagccgttcgaaaaccgtgtcaccgtgggcgtgatgtacatgatcaagctg
gcccacatggtggacgacaagattcacgcgcgttcgaccggtccttactcgttggtcacg
caacaaccgctgggcggaaaggcgcagttcggcggtcagcgtttcggagagatggaggtg
tgggcgctcgaagcttacggtgccgcctacacattgcaggagatactgacggtcaaatcg
gacgacgtggttggtcgcgtcaaaacctacgaatcgatcgtcaagggagagaacgtaccg
gagcccggtgtgcctgaatcgttcaaggtgttgatcaaggaactgcaaagtctcggtatg
gatgtcaagatcctgtcgggagacgagcaggaaatcgagattcgggagatcgatgaggaa
gatgagccagcgaacgacaggctgggattcgatctggacagcggggaaggcgagaaaaag
tcttcgtcgtcgtga
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