Polycladomyces abyssicola: JIR001_04040
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Entry
JIR001_04040 CDS
T07192
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pabs
Polycladomyces abyssicola
Pathway
pabs03420
Nucleotide excision repair
pabs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pabs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JIR001_04040 (pcrA)
03430 Mismatch repair
JIR001_04040 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pabs03400
]
JIR001_04040 (pcrA)
Enzymes [BR:
pabs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JIR001_04040 (pcrA)
DNA repair and recombination proteins [BR:
pabs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JIR001_04040 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
JIR001_04040 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PcrA_UvrD_tudor
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
ResIII
SH3_Tf2-1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BCU80621
UniProt:
A0A8D5UBW2
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All DBs
Position
418911..421034
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AA seq
707 aa
AA seq
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METTEGPVLVVAGAGSGKTRVLTRRVAYLLAKGVHPWNILAITFTNKAAREMKERIVSLV
GPSAEEIWISTFHAMCVRILRRDIDRIGYSRNFTILDTSDQLTVIKQVLKEQNLDPKKFE
PRAILHRIGQAKNQLLTPRQMKERADGLMDEVAAEVYEGYQHRLRQNQSLDFDDLLMTTV
QLFQQAPEVLDYYQRKFQYIHIDEYQDTNHAQYVLVKHLAARHQNLCVVGDSDQSIYRFR
GADISNILHFERDYPSAKVIKLEQNYRSTQTILDAANGVIEHNRSRKPKKLWTENERGER
IQLFEADNEHDEAYFVAETIIRGHREGHAYSDYAVLYRTNAQSRVLEEVFLKSNIPYQVV
GGIKFYERKEIKDILAYLRLVVNPHDDLSLQRVINVPKRGIGQATMDKIAQYAADHGISL
FEALLEAETIGLSARFLKPLSSFVQLIRELHAMVEYLSAVELTEEVLNRSGYREELKKEG
TLEAASRLENIDEFLSVAQEFEQRSEDKTLVAFLTDLALISDIDALEEEDEADSGVTLMT
LHSAKGLEFPHVFLVGMEEGIFPHVRSLDDEEEMEEERRLAYVGITRAEKRLYLTRARMR
MLFGQTSANPPSRFLSEIPDHLIQPANGEETTGTKPTLRHGPVRRPIPNPNVDWRVGDKV
RHGKWGVGTVVKVQGEGDDTELNIAFPAPVGVKRLLARYAPITRVES
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
gtggaaacgactgaaggccccgtgctggtcgtggccggcgccggaagcggaaagacccgg
gtgttgacccggcgtgtggcgtatttgcttgccaagggagtacatccgtggaacatcctg
gctatcacattcaccaataaagcggcgcgggagatgaaagagcggattgtctccttagtg
gggccgtcggctgaggaaatctggatttccacgtttcatgcgatgtgtgttcggattttg
cggcgagatatcgatcggatcggatattcgcgcaatttcaccatactggatacctccgat
cagctcaccgtcatcaaacaggtgttgaaggaacaaaacctggaccccaaaaaatttgaa
cctcgggccattctccatcgaatcggccaagccaaaaaccagttgctcaccccccgccag
atgaaggagagggcagacggactcatggatgaagtggcggcggaggtgtatgaggggtat
caacaccgtctgcggcaaaaccaatcactggatttcgacgatttgctcatgaccaccgtg
cagttgttccaacaagcaccggaagtgctggactactaccaacgcaaattccaatacatt
cacattgacgagtaccaagataccaaccatgcgcagtacgtgttggtgaaacatctggcg
gctcggcatcagaatctgtgcgttgtcggagattcggatcagtcgatctaccgtttccgt
ggggcggacatttccaatatcctgcatttcgagcgggattatccgtcggcaaaggtgatc
aaactggagcaaaactaccgctcaacgcagaccattttggatgcagccaacggagtgatc
gaacataaccgctcgcgcaagccgaagaaattgtggacagaaaatgagcggggcgagcgt
attcagctttttgaagcggataatgagcatgacgaagcctattttgtggcggagaccatc
atccggggacaccgggaaggccacgcctattccgactatgcggtactgtaccggaccaat
gcccaatcacgggtgttggaggaggtttttctcaaatccaacattccctaccaggtagta
gggggcatcaagttctacgagcgcaaggagattaaagacatcctggcttatctgcgtttg
gtggtcaatcctcatgacgatctcagcttgcaacgcgtgatcaatgtacccaaacgtggc
atcggtcaggcgacgatggacaagatcgcccagtatgcggcggatcacggcatttccctg
tttgaagcgctgctggaggcggaaacgattgggctgtcagctcgttttctcaagccgctt
tcgtcgttcgttcagttgatccgtgaactgcatgcgatggtggagtacctctccgcggtc
gagctgaccgaagaggtgttgaaccgttccggctaccgggaggagttgaaaaaggaaggg
acgttggaagccgcctcccgtctcgagaacatcgacgagtttctttcggtggcgcaggaa
tttgaacagcggagtgaggacaagacgcttgttgcctttttgaccgacctggctttgatc
tcggacattgacgcgctggaagaggaagacgaggcggatagcggcgtcacactcatgacg
ttgcacagcgccaaggggctggaatttccacatgtattcctcgtggggatggaggaaggc
atcttcccgcatgtccggtcgttggacgacgaggaggagatggaggaagagcggcgtctg
gcctatgtcggaatcacacgggcggagaaacggttgtatctgacccgggcccggatgcgg
atgttgtttggacagacgagtgctaatccgccttcccgtttcctctccgagattcctgat
catttaatccaaccggcgaacggggaagaaacgacgggaaccaaaccgacgttgcgccat
ggtcccgtcagacggcccatccccaacccgaacgtcgattggcgtgtgggggacaaagtg
cgacacggcaaatggggagtgggtacggtagttaaagtgcagggagaaggcgacgatacc
gagctgaacatcgccttccccgcaccggtcggcgtcaagcgcctgttggcgcggtatgcc
ccgattacgcgcgtggaaagctag
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