Polycladomyces abyssicola: JIR001_11330
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Entry
JIR001_11330 CDS
T07192
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pabs
Polycladomyces abyssicola
Pathway
pabs03410
Base excision repair
pabs03430
Mismatch repair
pabs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pabs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JIR001_11330 (recJ)
03430 Mismatch repair
JIR001_11330 (recJ)
03440 Homologous recombination
JIR001_11330 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pabs03400
]
JIR001_11330 (recJ)
DNA repair and recombination proteins [BR:
pabs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
JIR001_11330 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
JIR001_11330 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JIR001_11330 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
tRNA_anti-codon
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
BCU81350
UniProt:
A0A8D5UDX6
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All DBs
Position
1130599..1133079
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AA seq
826 aa
AA seq
DB search
MTSVGVCYNGSAKRGEPDSMLRPKTRWQTVEADQASCSTLADSLGVHPVVARLLVNRGLT
EVESARRFLRADASDLHDPFLMDGMEEAVDRVRTALKRNEKILVYGDYDADGVSSTALMM
TVFRRLGADAHYYIPNRFREGYGLNKEALAKAKADGVDLVITVDTGISAVEEAAYARELG
LDLIITDHHEPPDAIPESLAVINPKKPNCPYPFDMLAGVGVAFKLVQALLGEVPEEVWEL
AALGTIADLVPLVDENRIITVGGLRRMNQRRHVGLRALMDVSGIRGEVGSGHVGFSLGPR
INASGRLDSAVHAVELLLTQDDETAYMMANQLDQMNRERQQLVEEIFEEARAMVEADPDA
HRRFIVVASPGWNVGVIGIVASRLVERYYRPTIVLGIDEETGMAKGSARSIEGLDMYRAL
SECVDLLPHFGGHKMAAGMTLSAQDVPELHRRLDRLASEWLTEEDYIPISRVEYELTPDQ
VSVELIEQLEHLAPFGVGNPTPRFRVTGAGLSQIQLMGADRNHVKLILSDGNGTLDAVGF
RMKELAEEVTPHARIEVLGELQINEWNNKRIPQLLIRDVHVPHVQIFDWRGNGDKRDRLN
RLLADPYTLLLTSTPEKAPDRDQPAAWVSWDEWEKEAKMAPDRWSEFRRLVLLEPPPSLQ
TWERLVLTLLHVERFYFAFGDAEMDDVLLKTPDREGFKQLYGWLLRVQSVRLPRDLQRLQ
KMTGLSKRMISFMLRVFQELGFVDGSGDYLRVVPKPAKRPLHTSDSYRRQIERERVMRQL
VYSSYRELCHYVFDLLGLDLKIGGDENGFQRKDSRDSRLPATGYSV
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgacttcggtaggggtgtgctataatggaagcgcaaagcgaggtgaacctgattccatg
ctgcgcccgaaaacacgctggcagaccgtggaggcggatcaggccagctgttctaccttg
gcggactcgcttggagtccatccggtcgtcgcgcgtctcttggtcaatcggggattgacc
gaggtggaatctgcgcggcggtttttacgtgcagacgcttccgatttgcatgatcccttt
ctgatggacgggatggaagaagcggtggaccgcgtccgaacagcactgaaacgaaatgag
aaaatcttggtatacggtgattacgacgcggacggtgtatccagtacggctttgatgatg
acggtatttcggcgtcttggagctgacgcgcactattacatacccaaccgttttcgcgag
ggatatgggttgaacaaggaagcgctggccaaagccaaagcggatggggtcgatttggtc
attacggtcgatactggtatcagtgcggtggaagaagccgcatatgccagggagttggga
ttggatctcatcattacggaccatcacgagcctccggatgcgatccctgagtcattggca
gtgatcaatccgaaaaagccgaactgcccgtatccgttcgatatgttggccggagtgggc
gtggcgttcaaactggttcaggcgctactgggagaagtgccggaagaagtgtgggaattg
gcggcactgggcacgatcgcggacctcgttccattggtggacgaaaaccgaatcatcacc
gtcggcggcttgcgtagaatgaaccagcggagacatgtcggcctgcgggcattgatggat
gtctccgggatccgtggcgaagtgggatcggggcatgtcggattctcgctcggtccgaga
atcaatgcgagtgggcgtttggacagtgcggtgcatgcggtggaactgttgttgacgcaa
gacgatgaaaccgcttatatgatggccaatcagctggatcagatgaaccgggaacgacaa
caactcgtggaggagatcttcgaggaagcgcgggcgatggtggaagcggaccctgatgca
caccgtcgcttcatcgtggttgcttcacccggctggaatgtcggtgtcatcggcatcgtt
gcgtctcgattggtggaacggtactaccggcccaccatcgtgctcggtatcgacgaggag
acggggatggccaaaggttcggcacgcagtatcgagggactggatatgtaccgggctctg
tcagagtgcgtcgatctgctgcctcatttcggcggccacaaaatggcggcgggcatgacg
ctttcggcccaggacgtaccggaattgcaccggcgtctggatcgtctcgcgtccgaatgg
ttaaccgaggaggattacattccgatctcccgggtggaatacgagctgacgccggatcag
gtaagtgtggaattgatcgaacaattggagcatctcgcaccgttcggcgtggggaatccc
accccgcggtttcgtgtcacgggagcgggtttgtcccaaatccaacttatgggagcggac
cgcaatcacgtgaaattgattttatcggacggaaacggtacattggatgcggtgggattc
cgtatgaaagagttggccgaggaagttaccccgcacgcccggatcgaggtgttgggagag
ctgcagatcaacgagtggaacaacaaacgaatcccccaactgttgattcgtgatgtacac
gttccacacgtccagatcttcgattggcggggaaacggagacaaacgggatcggttgaac
cggttgcttgcggatccgtacacgttattgctgacttccactcctgagaaggctccggat
cgagatcagccggcagcttgggtgtcttgggacgagtgggagaaggaagcgaagatggct
ccggatcggtggtccgagttccgccggttggtgttgttggaaccccctcccagcttgcag
acgtgggaacgactcgtcctcacgcttttgcatgtggaacgtttttatttcgcgttcggc
gatgccgagatggatgatgtactgttgaagaccccggacagggaagggttcaaacaattg
tacggttggttgctgcgcgtgcagtcggtacgtttaccgcgggatttacaacgccttcaa
aaaatgaccgggctttctaaacggatgatctcctttatgttgcgggtatttcaggaactg
ggatttgtggatggcagcggggattatcttcgggtcgtgccgaaaccggccaagcgaccg
ctccacacctccgattcctatcggcggcagatcgagagggagcgcgtgatgcgccaactc
gtgtattcttcctaccgtgaattatgccattatgtgtttgatcttctgggattggacttg
aaaataggaggagacgaaaatggatttcaaagaaaagattcgcgtgattcccgacttccc
gcaaccgggtattcggtttaa
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