Polycladomyces abyssicola: JIR001_15160
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Entry
JIR001_15160 CDS
T07192
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pabs
Polycladomyces abyssicola
Pathway
pabs03420
Nucleotide excision repair
pabs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pabs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JIR001_15160
03430 Mismatch repair
JIR001_15160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pabs03400
]
JIR001_15160
Enzymes [BR:
pabs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JIR001_15160
DNA repair and recombination proteins [BR:
pabs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JIR001_15160
MMR (mismatch excision repair)
Other MMR factors
JIR001_15160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_22
PcrA_UvrD_tudor
DEAD
AAA_16
AAA_11
Motif
Other DBs
NCBI-ProteinID:
BCU81733
UniProt:
A0A8D5UFG5
LinkDB
All DBs
Position
1518696..1520837
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AA seq
713 aa
AA seq
DB search
MQGTGTFLTADLNDSQKAAVTHGEGAAVVFAGPGSGKTTVLTRRVLYLLEQGVSPERLMV
VTFTRAAAREMKNRLVQAAGRPLSGLWIGTFHSLFLSLLRRSGRSVPRLLKETEQTQWLR
QLLIEREQLADDEAVSTLLNQIGLCKGNLILPDRLKVKKEKNILFRDLYQAYESRKQLSG
VWDYDDILVETYRLLQDPRQQSVWCGYWEHVLVDEFQDINRVQFETLRILAPPSGNLFVV
GDDDQAIYSFRGSDPRLMQEVRTWFSPCRTIVLSTNYRSTESVIALGQRLIRHNRRRQEK
TLTGTGKQGPDPVWMEPADEEEEARQILARLDDGVETAVLYRTSTQARAMIDALVRADVP
FAVAEGDASFYRRWQVLDVMAYLRLADNPNDLDALVRIINKPKRYLFGEDWMDQVWTISQ
KTGQSLLQALADLPGLESYQRRLLQKLAMDVAALRGMNASEAVAYIREQIGYDAFLSSFA
QDTGNDESAVKEPVEELAVAATQFSGRDELLHHVTKVNEVVSHRPEQPRVHLMTFHRAKG
LEFDRVFLIGLHSMVLPHRRSLQVPEHKKAEAWEEERRLLYVGITRARRELFLSVSRTRQ
GKRVAPSPFLREMGFAGGSDRKEGTAEEGKRMPSVSVSVSSSRRPQPQQKFHGEAVRVGD
RIRHVKWGEGEVIEVAPIGGVAPGRKVVIRFSAGVQSLHYELSRQLGLLLPEE
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgcagggaaccgggacctttttgacggcggatctcaacgacagtcagaaggctgcagtg
acgcacggggaaggggctgctgttgtgtttgcgggtcctggaagcggcaaaacgacggtg
ttgacgcgccgtgtgctgtatttgttggaacaaggggtgtcacccgaacggctgatggtg
gtcaccttcacgcgtgccgccgcaagggaaatgaaaaatcgtttggtgcaagcggcggga
agaccgctcagcggattgtggatcggcacatttcattccctttttttatccctgttgcgt
cggtcaggacgttccgttccgcgtttgctgaaggaaacggagcagacgcagtggttgcgg
caactgttgatcgagcgggaacagctggccgatgatgaggcggtatccactttgctcaac
cagatcggtttgtgcaaagggaatttgatcttgcccgatcggttaaaggtgaaaaaggag
aagaacatcctgtttcgcgacctgtaccaagcgtatgaatcgcgcaaacaactgagcgga
gtgtgggattacgacgacatcctcgttgaaacgtatcgattgcttcaggacccccggcaa
caatccgtgtggtgcggttattgggaacatgtcctggtagatgaatttcaggacatcaac
cgggtgcaatttgagacattgcgtatacttgctccgcccagcggcaatctgtttgtcgtc
ggggatgacgatcaggcgatctattcctttcgcggcagtgacccgcgattgatgcaggag
gttcgcacatggttttctccctgccgaaccattgtactgtccaccaattaccgctccacc
gaatcagtcatcgcactgggccaacgattgattcgccataatcgccgcagacaagaaaaa
acattgaccggtacaggcaaacagggacccgacccggtgtggatggagccggccgacgag
gaagaagaggcgcggcagattctcgcccgattggacgacggggtggaaacggcggtactg
tatcggacgtcgacccaggcccgcgcgatgatcgacgcgttggtgcgggcggatgtgccg
tttgcggtggcggagggggatgcgtctttttaccgtcgttggcaagtgctcgacgtcatg
gcttatctgcggttggcagataatccgaacgatttggatgcactggtacggatcatcaac
aaaccgaagcggtatctgttcggggaggattggatggatcaggtgtggacaatctcccaa
aagacgggtcaatcgctgttacaagcattggcggatcttcccggtttggaatcctaccag
cggcggctgttgcagaagttggctatggatgtggcagcgttgcgagggatgaatgcctca
gaggcagttgcctatatccgggaacaaatcggttacgatgcgtttctctcatcgtttgcc
caagataccggcaatgacgaatccgcggtgaaggaacctgtggaggagctggcggtagcg
gcgactcagttttccggtcgggacgagctgttgcaccatgttaccaaagtgaatgaggtc
gtatcccatcgaccggaacaaccccgtgtgcacttgatgacgtttcaccgggcgaaaggg
ctggaatttgaccgtgtattcctgattggcctacatagcatggtacttccgcatcgacgc
agtttgcaggtgcctgaacacaaaaaagcggaagcgtgggaagaggaacggagattgttg
tatgtgggcatcacgcgggcgagaagggagctgttcctgtcggtcagtcggacacgtcaa
ggcaaacgggtggcaccgtctccgtttttgcgggagatgggatttgcaggcggatcggat
cggaaggagggaacggccgaggaagggaagcggatgccatccgtgtctgtatcggtatct
tcatcacggcgtccgcagccgcagcagaagtttcacggcgaggccgtccgcgtgggtgat
cggatccggcacgttaaatggggagaaggagaggtcatcgaagtggcgccgatcggcggg
gtcgcccccggacgcaaggttgtcattcgcttttccgcgggtgtccaatccttgcattac
gagttgtcacgacagttggggttgttgctgccggaagaatga
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