Polycladomyces abyssicola: JIR001_17980
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Entry
JIR001_17980 CDS
T07192
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pabs
Polycladomyces abyssicola
Pathway
pabs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pabs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JIR001_17980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pabs03019
]
JIR001_17980
03009 Ribosome biogenesis [BR:
pabs03009
]
JIR001_17980
Enzymes [BR:
pabs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JIR001_17980
Messenger RNA biogenesis [BR:
pabs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JIR001_17980
Ribosome biogenesis [BR:
pabs03009
]
Prokaryotic type
rRNA helicases
JIR001_17980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
Sdh5
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
BCU82015
UniProt:
A0A8D5UHI9
LinkDB
All DBs
Position
complement(1777146..1778729)
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AA seq
527 aa
AA seq
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MKSFERFDLDPAILKGIREMGFEEPSPIQAACIPAVLRGEDVIGQAQTGTGKTAAFGIPV
LERIDSRRRVVQSLILAPTRELAIQVSEELRKIGRPKRVRTLPIYGGQPIGRQIKALQQG
VHVVIGTPGRVLDHLRRGTLSLEHVEIMVLDEADEMLDMGFIDDIEAVMEFLPQHRQLLL
FSATMPPGIRSLSQKYMRKPRYITVNRGEVTVPAIEQAYYRVLESAKLDALCRILDSEDV
DLAIIFCRTKKNVDELAENLQARGYMAGGLHGDLAQSQRDRVMSAFRKGEIELLVATDVA
ARGIDVGSVSHVINYDIPQDVESYVHRIGRTGRAGRTGMALTLVTPREMKQLRAIEEEIG
RQLESRELPTLEEVAQKQQRAWMAEVEAVIESEDDRSLFEELYRKLETRHSPETIAVAAL
QLAFADRFATGNDAAYDFGETGASPGMVRFFINVGKNVNIRPHELVKVISEYAGISSKDV
GRINIYDRFSFVEVPEEAAPFVFEALRQSKINGARVNLEPARPRNRS
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgaagtcatttgaacgatttgatttggatcccgccattctcaaggggatccgtgaaatg
ggatttgaagagccctctccaattcaagccgcttgtatcccggctgttttgcggggagaa
gatgtgatcggacaagcgcagacgggaacgggaaagacggcagcgttcgggattcccgta
ttggagcggatcgactcgcgacgtcgagtggtgcaaagtctgattttggcgcccacccgc
gagctggctatacaagtgtctgaggaattgaggaaaatcggccgaccgaaacgggttcgc
acgctgcccatttatgggggacaaccgatcggacggcagatcaaagcgctgcagcaaggc
gttcacgttgtgatcggaacaccgggacgggtgttggatcatttgcgacgcggcacgctg
agcttggaacacgtcgaaatcatggtgttggatgaagcggacgaaatgctggatatgggc
tttattgatgacattgaagcggtgatggaatttttaccgcagcaccggcagttgcttctt
ttctccgccaccatgccgcctggcattcgcagcttgtcgcaaaaatatatgcgtaagcct
cgctatatcaccgtcaatcggggcgaagtaacagtgccggcgattgagcaagcctactat
cgtgtgctggaaagcgcgaagctggacgcgttgtgccggattctggacagtgaggatgtg
gatctggccattatattctgccgtaccaaaaagaacgtcgatgaactggcagaaaatctg
caggccaggggctatatggccggaggccttcacggcgacctggctcaatcccagcgtgac
cgggtgatgagcgctttccgcaaaggggagattgagctgctggtggctactgatgtcgct
gcacgcgggatcgacgtcggcagtgtttcccacgtgatcaactacgacatcccgcaggac
gtagaaagttacgttcaccgcatcggccggacgggccgtgcgggcaggaccggtatggcg
ctgacgctcgtcacgccgcgggagatgaagcagttgcgcgccatcgaagaggagatcggt
cggcagctggaatctcgcgaactgcccaccttagaagaagtggcgcaaaaacagcaacga
gcctggatggccgaggtggaggcggtgatcgaatccgaagacgaccgttcgttgtttgag
gagctgtaccgcaagctggaaacgcggcactccccggagacaatcgctgtggccgctttg
cagctggcatttgctgaccgcttcgctaccggcaacgatgcggcctacgacttcggtgaa
acgggtgcgtcaccggggatggtgcgatttttcatcaacgtgggcaaaaacgtcaacatc
cgtccgcatgaactagtcaaagtgatctcggaatatgcgggtatttccagtaaggacgtg
gggcggatcaatatctacgatcgcttctcctttgtggaagtgccggaagaagcggcgccg
ttcgtgtttgaggcgttacgtcagtccaaaatcaacggcgcacgagtcaatctggaaccg
gcccgccctcgtaaccgttcataa
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