Polycladomyces abyssicola: JIR001_18320
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Entry
JIR001_18320 CDS
T07192
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pabs
Polycladomyces abyssicola
Pathway
pabs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pabs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JIR001_18320 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pabs03019
]
JIR001_18320 (pnp)
03016 Transfer RNA biogenesis [BR:
pabs03016
]
JIR001_18320 (pnp)
Enzymes [BR:
pabs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
JIR001_18320 (pnp)
Messenger RNA biogenesis [BR:
pabs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JIR001_18320 (pnp)
Transfer RNA biogenesis [BR:
pabs03016
]
Prokaryotic type
tRNA degradation factors
JIR001_18320 (pnp)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
PCB_OB
S1_RRP5
SPATA25
Virulence_fact
OB_RRP5_4th
MCR_beta_N
Motif
Other DBs
NCBI-ProteinID:
BCU82049
UniProt:
A0A8D5ZL16
LinkDB
All DBs
Position
complement(1811690..1813792)
Genome browser
AA seq
700 aa
AA seq
DB search
MEPAKFETELAGRRLVLEFGSYANQANGSVLVRYGDTVVLATAVASKEPRDTDFFPLTVN
YEERLYAVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFPDGFRNEVQVVCLVLSVDQ
DCSSEIAAMIGASAALSVSDIPFDGPIAGVIVGRVDGKLVINPTVEQMEKSDMHLVVAGT
KDAINMVEAGSNEVPEEDILEAILYGHETVRRLVEFQEEIVRAIGKEKMVPELYEVPEEL
ERRVREMATDRLIQAAQIVEKQERQNAIDAINQEVLEALAEEYPEQEADILNVLHDILKE
EVRRMILEEGKRPDGRTAEEIRPLSSEVHILPRTHGSGLFRRGQTQVLSVCTLGALGDVQ
ILDGLDLEESKRFMHHYNFPPFSVGEARPIRAPGRREIGHGALGERALEPVIPSEDEFPY
TIRLVSEVLESNGSTSQASICASTLALMDAGVPIKAPVAGIAMGLVKEGDRVAVLTDIQG
MEDHLGDMDFKVAGTRKGVTALQMDIKIKGIDRDILKAALEQARKARMTILDNMAQAIAE
PRQELSPYAPKILTMRIHPDKIRDVIGPSGRVINRIIDETGVKIDIEQDGRIYIASTDPK
QNEAAKKIIEDLVREVEVGETYLGTVKRVEKYGAFVEVLPGKEGLVHISQLAENRVAKVS
DVVKVGDTILVKVTEIDDQGRINLSRKAVLKEKPNIKIKN
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggaacctgcaaaatttgagacagaattggccggcaggcgacttgtcctggaatttggc
agttacgccaatcaggccaatggttcggtcctggtgcgatatggagatacagtggtcctg
gcgacggcagtagcctccaaagaaccaagggatacggactttttcccgctgacggtcaac
tacgaagagcgtttgtacgcggttggtaagatacccggcggattcatcaaacgtgaaggg
cggccgagcgaaaaagcggtgttggccagccggttgatcgaccgtccgattcgtccgctg
ttccctgacggtttcaggaatgaggtgcaagtggtttgtttggtcctgtcggtcgatcag
gattgttcttccgagattgccgcgatgatcggagcatccgccgcactgtctgtttccgac
atcccgtttgacggcccgatcgctggcgtgatcgtcggacgggtggatggaaaactggtg
atcaacccgacggtggagcagatggaaaaaagtgacatgcatctcgtggtggccggtacg
aaagacgccatcaacatggtggaagccgggtccaacgaggtgccggaggaagatatcctg
gaagcgattctctacggtcatgagacggtacgtcgattggtcgagtttcaggaggaaatc
gtgcgggcaatcggcaaggaaaaaatggtgcccgagctgtacgaggtgccggaagagctg
gagcgccgtgtccgcgagatggcgacggaccgtctgatccaggcggcacaaatcgtggaa
aaacaggaacggcaaaacgcgatcgacgcgatcaatcaggaagtgctggaggcgcttgcg
gaggaatatccggagcaagaagccgatattctgaatgtgctgcatgacatcctcaaagaa
gaagtgcgccgcatgattctcgaggaaggcaaacggcccgatggacggaccgctgaagag
atccggccgctatccagtgaggttcacattttgccgcgcacgcacggttctggtctgttc
cggcggggtcagacgcaagtgctcagtgtgtgtaccctgggtgcactgggagatgtgcag
attttggacggtttggatctggaggagtccaagcggttcatgcaccattacaatttcccg
cctttcagtgtcggcgaggcacgaccgatccgggcgccgggacggagggaaatcggtcac
ggtgcgttgggtgaacgcgcattggaacctgtcattccgtctgaggacgaattcccgtac
accatccggctggtatcggaagtactggagtccaacggttccacctcccaagccagcatt
tgtgcgtccacgttggcgctgatggatgcgggtgtgccgatcaaggctccggtggccggt
atcgcgatgggattggtcaaagagggtgaccgggtagcggtgctgaccgacattcagggt
atggaagaccacttgggtgacatggacttcaaagtggccggcacgcgcaaaggggtcacc
gccctgcagatggatattaaaatcaaaggcatcgaccgtgacatcttgaaagcagcattg
gaacaggcacgtaaagcgcggatgacgattctggacaacatggcacaagcgatcgcagaa
ccacgtcaggagttgtcgccttacgctccgaaaatcttgacgatgcgcatccatccggac
aagatccgcgacgtgatcggaccgagcggtcgtgtgatcaaccgcatcatcgacgaaacg
ggcgtcaaaatcgacatcgagcaggacggccgtatctacatcgcttccaccgatccaaaa
caaaacgaagcggccaagaaaatcatcgaagacctggtgcgcgaggtggaagtgggcgaa
acgtatctcggcacggtgaagcgagtggagaagtacggcgcctttgtcgaggtcctgccg
ggcaaggaagggttggtccatatctcgcaactggctgaaaatcgagtggccaaagtgtcg
gatgtcgtgaaagtgggagacacgattctggtcaaggtaacggagatcgacgaccaggga
cggatcaatctgtcgcgcaaagcggtattgaaggagaaacccaacatcaagatcaagaac
tga
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