Polycladomyces abyssicola: JIR001_23470
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Entry
JIR001_23470 CDS
T07192
Symbol
pbpA
Name
(GenBank) penicillin-binding protein 2
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
pabs
Polycladomyces abyssicola
Pathway
pabs00550
Peptidoglycan biosynthesis
pabs01100
Metabolic pathways
pabs01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
pabs00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
JIR001_23470 (pbpA)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
JIR001_23470 (pbpA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pabs01011
]
JIR001_23470 (pbpA)
Enzymes [BR:
pabs01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
JIR001_23470 (pbpA)
Peptidoglycan biosynthesis and degradation proteins [BR:
pabs01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
JIR001_23470 (pbpA)
BRITE hierarchy
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Ortholog
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GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
Thiaminase-1_dom
Motif
Other DBs
NCBI-ProteinID:
BCU82564
UniProt:
A0A8D5UGA5
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All DBs
Position
complement(2316610..2318601)
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AA seq
663 aa
AA seq
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MIGMIRPKHHMTPKEMSFQRLHVLWLFVFLLFVILVLRLSWVQLGGGERYHRLAAENNFK
QIPVLAPRGNIYDRNGKPIVTNQSLYTAIYLETDDPKDRKLATAKRLAQVLHLPLEEVLQ
SMDVGLDAKGNDVPRREPPYYPKKIKDRLTEREVVELVENPSLFPGINVIMEPLRKYRND
TFAVQTIGYVRSFAGAKSSLKKYKSAAEKPDQGGYLDWEQVGMDGIEYSYQDQLRGKHGY
RLVRVNSSGKVVQVLKEVHPRPGNSLYLTLDEQMQLETEKFIEEHLRHLRTMGGKNQAPY
AKSAYAVAMEVKTGKIRAMVSYPDYDPSIWNRRVSPKDYENLRFVIRNGTIEEAPFDASG
YDNPDRVVNRHPFSVLPLGSTFKPLMVLMGLQEKLITPWTYWADPGKFYYAEATPPIRNA
GGHNYGVLNPIRALQKSSNTFMAWLGTKWYRRDKEKALKKFLDYTHQFGLGVPTGVRLKG
EQDGTEDYRSIAKRFSGLGAMALASFGQAQRYTTLQLAQYAATLANKGVRLRPQLVEKIV
DANNKVIEETKPEVLNRAAINPRYFDTVTKGMVAVTQPGGTASQLFKGLPFQVAAKTGTS
EQDIPGRGRVENSVFIAFAPADNPQIAVAVVVPEGGYGAVGAGPIAEKMIQLYYQRFMQN
QAH
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgatcgggatgatcagaccgaaacatcacatgacaccgaaagagatgagttttcaacgg
ttgcatgtgttgtggctgtttgtttttctgctttttgtgatattggttctcagattgagt
tgggtgcagttgggcgggggagaacgatatcatcgcctcgctgctgagaacaacttcaag
caaattcccgttcttgcccccaggggcaatatctacgaccggaacggcaaaccgattgtg
accaaccaatcgctgtatacggccatttatttggaaacggacgacccaaaagatcgaaag
ctggcgactgccaaacggttggcccaagtattgcatctgccgttggaagaagttcttcag
tcgatggatgtaggtctggatgccaaaggaaatgatgtgccccgccgagagcctccctat
tatccgaaaaagatcaaggaccgcctgacggaacgagaagtggtcgaactggtggaaaat
ccatccctgtttcccggaattaacgtgatcatggaacccctgcgcaaatatcggaatgat
acgtttgcagtgcagacgattggctatgtccgatcattcgcaggagcaaaatcctccttg
aaaaaatacaaatcagctgcggaaaagccggatcaagggggatacctggattgggaacag
gtggggatggatggaattgagtacagctaccaggaccaattgcgaggcaagcacggatac
cgtctggtgagggtaaattcatcgggaaaagtagtgcaggtactcaaagaggtgcatcct
cgaccgggtaacagcttatatttgacattggatgaacaaatgcagttggagacagagaaa
tttatcgaggagcatttgcgccatttacggacgatgggaggcaaaaaccaggcgccatac
gccaaatcggcctacgcggtggcgatggaagtcaaaacgggtaagatccgggcgatggtt
agttaccccgactacgatccgagtatttggaatcggcgcgtttcgcccaaagactacgaa
aatctgcgatttgtgattcgcaacggcacgatcgaagaggcgccatttgatgccagcggt
tacgataacccggaccgggtggtaaaccggcatccattttcggtgttgcccttggggtct
acgtttaagccgctgatggttttgatggggcttcaggaaaagttgatcacaccgtggacc
tattgggcggacccggggaaattttactatgcggaagcgactccgcccattcgcaatgcc
ggcgggcacaactacggcgtgctgaatccgatccgggcgctgcaaaagtcctccaacacc
ttcatggcatggttgggtacgaaatggtaccggcgggacaaagaaaaggcgctgaaaaaa
tttctggactacacccaccagtttgggttgggtgttccgacgggcgtccggttgaaaggg
gaacaggacggaacggaagactatcgcagcatcgccaagcgtttctccggattgggtgcg
atggcgctggcctcatttgggcaggcccaacgttataccacgttgcagctggcacagtat
gcggccactttggccaacaaaggggtacggttacgtccgcagttggtggaaaaaatagta
gatgcaaacaataaggtgattgaagaaacgaaaccggaagtgttgaatcgcgctgcgatc
aatcctcggtattttgatacggtaacgaaggggatggtggcggttactcaacccggcggc
accgcttctcagctgttcaaaggactgccgtttcaggtggccgccaagaccggtacgtcg
gagcaggatattccgggacgcggccgggtggaaaactccgtattcatcgcctttgctcct
gccgacaatccgcagatcgcagtagccgttgtggtgccggaaggaggctatggtgcggta
ggggccggcccgattgcggaaaagatgatacaactttattaccagcgtttcatgcagaac
caggcccattga
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