Polycladomyces abyssicola: JIR001_23610
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Entry
JIR001_23610 CDS
T07192
Symbol
lcfA_2
Name
(GenBank) long-chain-fatty-acid--CoA ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
pabs
Polycladomyces abyssicola
Pathway
pabs00061
Fatty acid biosynthesis
pabs00071
Fatty acid degradation
pabs01100
Metabolic pathways
pabs01212
Fatty acid metabolism
pabs02024
Quorum sensing
pabs04146
Peroxisome
Module
pabs_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
pabs00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
JIR001_23610 (lcfA_2)
00071 Fatty acid degradation
JIR001_23610 (lcfA_2)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
JIR001_23610 (lcfA_2)
09145 Cellular community - prokaryotes
02024 Quorum sensing
JIR001_23610 (lcfA_2)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
pabs01004
]
JIR001_23610 (lcfA_2)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pabs04147
]
JIR001_23610 (lcfA_2)
Enzymes [BR:
pabs01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
JIR001_23610 (lcfA_2)
Lipid biosynthesis proteins [BR:
pabs01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
JIR001_23610 (lcfA_2)
Exosome [BR:
pabs04147
]
Exosomal proteins
Exosomal proteins of breast milk
JIR001_23610 (lcfA_2)
Exosomal proteins of breast cancer cells
JIR001_23610 (lcfA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
BCU82578
UniProt:
A0A8D5ZPQ5
LinkDB
All DBs
Position
complement(2331363..2333066)
Genome browser
AA seq
567 aa
AA seq
DB search
MSSPYADKPWLASYPPYVPQKLPLPKMSMIGCFEESVKRRPEQAAVHYFDHSISYQELDD
MAEAFAVLLAEWGVGKGDRVAVYMQNNPQFLIAQYGAWKRGAIMVPLNPMFKEKELEYHL
NDSGAKVLICLESLYAAVAKQVVAKTMVEHVVTTHEADLLPKGMKESIILLENSDKQQFA
ETTDMIKAVQKRLNRKTPREEVTPEDIAYLVYTSGTTGLPKGAKSLHKNIAFNAEVYRTW
MQLGDEDCVLGVAPLFHITGIVGHIAVAGLAGIPLVLFHRFDVKEMLRLVEKWRPTFTVG
SITVYIALMNHPDAEKVDLSSLKKCYSGGAPIAPSITDQFMEKFGIYIHNIYGLTESNSP
THAVPFGARAPVDPESGALSVGIPVPNCEAKLVDLADPSKEVAAGEKGEFAVRGPMIFAG
YWNKPDETKKAFHDGWFLTGDVVKMDEKGWFYVVDRKKDMIIASGFKVWPRDVEDVLYQH
PAVKEAAVVGVPHPYRGETVRAYVSLKEGFEVTEEELIQFCKERMADYKYPREIVFLKEL
PKTATGKFLRRQLRDQAREEALKQQKA
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctccttacgcagacaaaccctggcttgcatcgtaccctccttatgttccacag
aaacttcctctgccgaaaatgagtatgatcggttgtttcgaagagtcggtgaagcggcgt
cctgagcaggctgctgtccattatttcgatcactccatttcctatcaggagctggatgac
atggcagaagccttcgctgttctcctggcggaatggggagtgggcaaaggggatcgggtg
gctgtctacatgcagaacaacccccagttcctcatcgcccagtacggcgcctggaagcgc
ggcgcgatcatggtacccctcaatccgatgttcaaggaaaaggagttggagtaccactta
aacgactccggcgcaaaggttttgatctgtctggagtccctctacgcagcagtggccaag
caagtggtggcgaagaccatggtggaacacgtggtcaccacccatgaggctgacctgctt
ccgaaggggatgaaggaatccatcatcctgctcgaaaactctgataagcagcagtttgcc
gaaaccaccgacatgataaaggcggtgcaaaagaggttgaaccgaaaaaccccccgggag
gaggtcacccctgaggacatcgcctacttggtgtacacctccggcaccacgggccttccc
aagggggcaaaaagccttcacaagaacatcgcgtttaacgctgaggtgtatcgaacctgg
atgcagctgggagacgaggactgcgtgttgggtgtggcccctttgttccacatcaccggc
atcgtgggccatatcgccgtggcgggccttgccggtatccccctggtgctgttccatcga
tttgacgtcaaggagatgctgcgtctcgtcgaaaagtggcggcccaccttcactgtaggc
tccatcactgtctacatcgccctgatgaaccatcccgatgctgaaaaggtcgatctttct
tctttgaaaaaatgctatagcggtggtgctcccatcgcccccagcatcaccgatcagttt
atggagaagttcggcatttatatccacaacatttacgggctgacagaaagcaactccccc
acccacgccgtgccctttggtgcccgagcgccggtagatccagagagtggagccctgtcg
gtgggcattcccgtccccaactgcgaagcgaagctggtggacctcgcagacccctccaag
gaggtcgccgccggggagaaaggagaatttgccgtgcggggtccgatgatcttcgccggt
tactggaacaagcccgatgagacgaaaaaagccttccacgacggatggttcctcaccgga
gacgtggtcaagatggatgaaaagggctggttttacgttgttgaccggaaaaaggacatg
atcatcgcctccggcttcaaggtgtggcctcgggatgtggaggacgtcctgtatcagcat
cccgctgtgaaggaggcggcggtggtcggcgttccccacccttaccgaggggagacggta
agagcttatgtttctcttaaggaagggtttgaggtaacggaggaggagttgatccaattc
tgtaaggagcggatggcggattacaagtacccccgggagatcgtctttctgaaggaattg
cccaagacggccacgggcaaattccttcgccggcagctcagagaccaggcgagggaggaa
gctttgaagcagcaaaaagcgtaa
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