Polycladomyces abyssicola: JIR001_28760
Help
Entry
JIR001_28760 CDS
T07192
Symbol
vacB
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pabs
Polycladomyces abyssicola
Pathway
pabs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pabs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JIR001_28760 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pabs03019
]
JIR001_28760 (vacB)
03016 Transfer RNA biogenesis [BR:
pabs03016
]
JIR001_28760 (vacB)
Enzymes [BR:
pabs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
JIR001_28760 (vacB)
Messenger RNA biogenesis [BR:
pabs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JIR001_28760 (vacB)
Transfer RNA biogenesis [BR:
pabs03016
]
Prokaryotic type
tRNA degradation factors
JIR001_28760 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
OB_HELZ2
RNase_II_C_S1
Rho_RNA_bind
S1_RRP5
RNA_pol_Rbc25
Motif
Other DBs
NCBI-ProteinID:
BCU83093
UniProt:
A0A8D5UJC0
LinkDB
All DBs
Position
complement(2864252..2866519)
Genome browser
AA seq
755 aa
AA seq
DB search
MIEEQEILTFMKKKAYKPLTFMELVEAFAIDEEEIEAFRSLVDQMEQEGRIVQTRSRRYG
VPERFNLVRGILQGHPKGFGFVVQDRPNAPDIYVHPNDMNGAMDGDTVLVRLQGKQARNM
RPEGEIVRILKRGRTVVVGTFTSPSTHFGFVIPDDKRLPTDIFIPPEARNGAKQGDKVVV
ELHHIPDSRFTAEGVVTEVLGHKDDPGVDILSIIRKYQLPEAFPEEVLAEAEQIPTEIDP
AEIEGRRDLRDRTMVTIDGEDAKDLDDAVSVERLPNGNIRLGVHIADVSYYVKEGSALDR
EAYARGNSVYLVDRVIPMLPPRLSNGICSLNPQVDRLTLTCDMEIDPDGNVVSHEIYPSV
IRTNERMTYTAVKRILEDEDPELIARYEPLVDDFRLMADLARTLRRKRLKRGAIDFNFTE
AKIKVDENGKPVEIVKRPRTIAEQLIEEFMLCANETVAEHFAWADIPFLYRIHENPDTEK
LQAFYEFITHFGYSVKGRADKVKPRALQELLEKISGKPEETLISTVLLRSMKQARYAAEC
TGHFGLAATFYCHFTSPIRRYPDLVIHRIIREVLANGTLSPERMNQLKDKLPDIAQQCSV
RERIAVEAERETDDLKKAEFMLDKIGQEFDGIISGVTSFGIFVELDNTVEGLVHISYMTD
DYYHYDENAYCLIGERTGNIFRIGDRVRVRVVGVNIDEHKVDFELVPDWEDGGLFQRSPK
RRKRRKETDSESRMRKGKKKKKAKKAEAKGKKKKP
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgaagaacaagagatcttgacattcatgaaaaaaaaggcgtacaaaccgcttaca
ttcatggaattggtcgaagcatttgcgatcgatgaggaagagatcgaggcgtttcgatct
ttggtcgatcaaatggaacaagaaggcagaatcgtacagactcgatcccggcggtacggg
gtgcccgagcggtttaatcttgtgcgtggaatactgcagggacatcccaaagggttcggt
tttgtcgtgcaagaccggcccaacgcaccggacatctacgttcatcccaacgacatgaac
ggggcgatggacggcgatacggtactcgtccgcctacaggggaaacaagcacggaatatg
cggcctgaaggggaaattgtccgtattttgaaacggggtcgtactgtcgtggtgggaacg
ttcaccagcccatccacacacttcgggttcgtcattcccgatgataaacgcctgccgaca
gacattttcattcccccggaggcacgaaatggtgccaaacagggggacaaagtggttgtc
gaactgcatcacattcccgacagtcgtttcaccgcagagggtgtggtcacggaagtgctg
ggtcacaaagatgatccaggtgtcgatatcctctccatcattcgcaaataccaactgcct
gaggctttccctgaagaggtgctggccgaggccgaacaaatccccaccgaaatcgatccg
gcggaaatcgagggaaggcgggatctgcgcgaccgtacgatggtgaccatcgacggggaa
gacgccaaggacttggacgacgcggtgtcagtggaacgcctgcccaacggcaacatccgc
cttggcgttcatatcgccgacgtcagctattatgtgaaagaagggagtgcgctcgatcgg
gaagcctatgcccgtggcaacagcgtctatctcgtggaccgggtgatccccatgttgccg
ccgcggctgtccaacggcatctgcagtctcaaccctcaggtggatcgtctgacactcacc
tgcgatatggaaatcgacccggatggcaatgtcgtcagtcatgagatctatcccagcgtc
attcgtacgaacgaacggatgacctataccgctgtcaaacgtatcctggaggacgaagat
cccgagctgatcgcgcgttatgagccattggtggacgatttccgcttgatggccgacctg
gcccgtactttgcgtagaaagcggctcaaacggggcgccatcgatttcaatttcacggaa
gccaaaatcaaggtggacgaaaacggaaaaccggttgaaattgtgaaacggccacgtacg
atcgccgagcagttgatcgaggaattcatgctgtgcgccaacgaaacagtggcggagcat
tttgcctgggcggatatcccgtttttgtaccggattcacgaaaatccggatacggagaaa
ctgcaggcgttttacgagttcatcactcatttcggctacagtgtcaagggacgggcggat
aaagtgaaaccccgcgcgctccaggagttgttggagaaaatcagtggcaaaccggaagag
acgctgatcagcaccgtcctgcttcgttcgatgaagcaagcgcgttacgccgcggaatgc
acgggccacttcgggttggcggcaacgttttactgccacttcacctcaccgatccggcgg
taccccgatctggtcattcaccgtatcattcgggaagtactggccaatgggacgttgtcc
cccgagcggatgaaccagttgaaagacaaactgccggatattgcccagcaatgctcagtt
cgcgagcgcatcgccgttgaagcggagcgggagacggacgatctgaaaaaagccgagttt
atgctggacaaaattggacaggaatttgacggcatcatcagcggtgtcacctcgtttggc
attttcgttgaattggacaacaccgtcgaaggactggtgcacatcagctacatgaccgac
gactattatcactacgatgaaaatgcctattgcttgatcggggagcgcacggggaacatt
ttccgcattggagaccgggttcgcgttcgggtggtcggtgtcaacatcgacgagcacaag
gtggacttcgagctggtgccggactgggaagacggcgggctgttccaacgaagccccaaa
cgcagaaagcgcaggaaagagacggattcggagtcgagaatgcgcaagggaaagaagaaa
aagaaagccaaaaaagcggaggcgaaggggaaaaagaagaagccctga
DBGET
integrated database retrieval system
