Polycladomyces abyssicola: JIR001_30680
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Entry
JIR001_30680 CDS
T07192
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pabs
Polycladomyces abyssicola
Pathway
pabs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pabs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JIR001_30680 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pabs03021
]
JIR001_30680 (rho)
03019 Messenger RNA biogenesis [BR:
pabs03019
]
JIR001_30680 (rho)
Transcription machinery [BR:
pabs03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
JIR001_30680 (rho)
Messenger RNA biogenesis [BR:
pabs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JIR001_30680 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
ATPase_2
NACHT
OB_RNB
AAA
AAA_25
Motif
Other DBs
NCBI-ProteinID:
BCU83285
UniProt:
A0A8D5UHC9
LinkDB
All DBs
Position
complement(3063529..3064806)
Genome browser
AA seq
425 aa
AA seq
DB search
MMAMDMSLSDLENRRLTDLYKLAKEYQIPYYSQMKKKELIFAILKAQAERDGLMFMEGVL
DILPEGYGFLRPINYLPSSEDIYISASQIRRFDLRPGDLVSGKVRPPKENERYFGLLHVE
AVNGMDPEQAAERLHFPALTPLYPQRRLLLETSPDKLSTRIMDLIAPVGLGQRGLIVAQP
KAGKTMLLKEIANSISTNYPDIELFVLLIDERPEEVTDMQRSVKGEVVSSTFDELPENHI
KVAELVLERAQRLVEHKKDVVILLDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRF
FGAARNIEEGGSLTILATALIDTGSRMDDVIYEEFKGTGNLELHLDRKLAERRIFPAIDI
RRSGTRREELLLSKSELEKLWMLRKTIQDTPEYIEAFLRKLASTKTNAEFLATLEPRPRR
STTAS
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgatggcgatggatatgtcgctcagcgatctggaaaatcgccgattgacggacttgtac
aaactggcgaaagagtatcagatcccgtattacagccaaatgaaaaagaaagagctgatt
tttgcgattctcaaagcacaggcggagcgggacggactgatgtttatggaaggcgtgttg
gacattcttcctgagggatacggttttttacggccgatcaattatctgccgtcttccgaa
gatatctatatctccgcctcgcaaatccgtcggtttgatttacgacccggggatcttgta
tccgggaaagtgaggccgccaaaggaaaatgagcggtatttcggtctgttgcacgtggaa
gccgtcaatggaatggatccggaacaggcggcagaacggttgcacttccccgcactcact
cctctgtatccccaacgcaggctcctcttggagacaagcccggacaagctctctacccgc
atcatggatttgattgccccggtcggattgggtcagcgcggattgatcgtggcacagccc
aaggcgggtaaaaccatgttgttaaaagagattgccaacagcatttcaaccaactatccg
gatattgagttgttcgtgctgttgatcgacgagcgtccggaggaagtgacggacatgcag
cgttccgtcaaaggggaagtggtgagctccacttttgatgaattgccggaaaaccacatc
aaagtggctgaactggtcttggaacgggctcaacgtttggtggagcacaaaaaagacgtg
gttattctgttggacagcatcacacgtctggctcgggcatacaatttggtgattccgccg
agcggacggacattgtccggcgggatcgaccctgctgctttccatcggcccaagcggttc
ttcggtgccgcccgcaacatcgaagaaggcgggagcctgaccattttggcgacggcattg
atcgataccggatcgcggatggacgatgtgatctatgaagagttcaagggaaccggaaac
ctggagttgcatctggatcggaaattggccgagcggcgtattttcccggcgatcgatatc
cgtcgttccggtacgcgtcgcgaagagttgttactcagcaaatcggaactggagaaattg
tggatgctgcggaaaacgatacaggacacgccggaatatatagaggcgttcctccgcaaa
ttggccagcacgaagacgaatgcagagtttttggccacgctggaaccgcgtccgcgtcgt
tccacaacagcttcctga
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