Salipiger abyssi: Ga0080574_TMP1129
Help
Entry
Ga0080574_TMP1129 CDS
T04681
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
paby
Salipiger abyssi
Pathway
paby03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paby00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ga0080574_TMP1129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paby03019
]
Ga0080574_TMP1129
Enzymes [BR:
paby01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ga0080574_TMP1129
Messenger RNA biogenesis [BR:
paby03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ga0080574_TMP1129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
AAA_11
CMS1
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
APZ51463
UniProt:
A0A1P8UPY4
LinkDB
All DBs
Position
complement(442788..444080)
Genome browser
AA seq
430 aa
AA seq
DB search
MFDFDMLGLSPALNDALSRNGFKEPTPIQNQAIPLALEGHDVLGLAQTGTGKTLAFGLPL
IDRLLQSPGKPAPKTVKALILAPTRELVNQIAESLKQLTDGTRIRVSTVVGGQSINRQIN
FLSRGTDILVATPGRLIDLMERRAVDLSSASYLVLDEADQMLDLGFIHALRKIAPALGTP
RQTMLFSATMPKQMEELSAAYLTNPRKVQVSPPGKAADKITQSVHFLEKPAKPRKLREIL
SMDTDALTLVFARTKHGAEKLMKGLVADGFNAASIHGNKSQGQRDRAIKAFRDGTINVLV
ATDVAARGIDIPGVAYVVNYDLPEVPDNYVHRIGRTARAGREGEAIALCAPDEADLLRQI
QRLMKIDIPVASGEAPEELTSGGGQGRRGGPSRRRGGGGGGKPGGFNKGAGGGAAKPGQA
RRRRPRRRAA
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
ttgttcgatttcgacatgctcggcctctcgccggcgctcaacgacgccctgagccgcaat
ggtttcaaggaacccaccccgatccagaaccaggcgatcccgctggcgctcgaaggtcac
gacgtgctgggcctcgcccagaccggcaccggcaagacgctggccttcggtctgccgctg
atcgaccggctgctgcaaagcccgggcaagcccgcgcccaagacggtcaaggcgctgatc
ctggcgcccacccgcgagctggtgaaccagatcgccgagagcctcaagcagctcaccgac
ggcacccgcatccgcgtctcgaccgtggtgggcggccagtccatcaaccggcagatcaat
ttcctgtcgcgcggcaccgatattctggtggccacgccgggccggctcatcgacctgatg
gagcggcgcgcggtggatctgtcctccgccagctatctggtgctggacgaggccgaccag
atgctcgatctcggctttatccacgcgctgcgcaagatcgcgccggcgctggggacgccg
cgccagaccatgctgttctcggccaccatgccgaagcagatggaagagctgagcgccgcc
tatctcaccaacccgcgcaaggtgcaggtctcgcctccgggcaaggccgccgacaagatc
acccagtcggtgcatttcctcgaaaaacccgccaagccgcgcaagctgcgcgagatcctg
tcgatggataccgacgcgctgacgctggtctttgcacgcaccaagcacggtgccgaaaag
ctgatgaaggggctggtggccgacgggttcaacgccgcctcgatccacggcaacaagagc
cagggccagcgtgaccgcgccatcaaggcgttccgcgacggcacgatcaacgtgctggtg
gcgaccgacgtggcggcacgcggcatcgacattccgggcgtggcctatgtggtcaactac
gatctgcccgaggtgccggacaactatgtgcaccgcatcggccgtaccgcgcgcgccggg
cgcgaaggcgaggcgattgcgctttgcgcgccggacgaggcggatctgctgcgccagatc
cagcgcctgatgaagatcgacatccccgtggccagcggcgaggcgcccgaagagctgacc
tccggtggcgggcaggggcgccgtggcggcccgtcgcgtcgccgtggcggcggtggcggc
ggcaagccgggcgggttcaacaagggcgccggtggcggtgccgcgaaacccggtcaggcc
cggcgccggcgtccgcgccgccgcgctgcctga
DBGET
integrated database retrieval system
