Salipiger abyssi: Ga0080574_TMP1362
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Entry
Ga0080574_TMP1362 CDS
T04681
Name
(GenBank) ATP-dependent DNA helicase, Rep family
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
paby
Salipiger abyssi
Pathway
paby03420
Nucleotide excision repair
paby03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
paby00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Ga0080574_TMP1362
03430 Mismatch repair
Ga0080574_TMP1362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paby03400
]
Ga0080574_TMP1362
Enzymes [BR:
paby01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ga0080574_TMP1362
DNA repair and recombination proteins [BR:
paby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Ga0080574_TMP1362
MMR (mismatch excision repair)
Other MMR factors
Ga0080574_TMP1362
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_11
Motif
Other DBs
NCBI-ProteinID:
APZ51696
UniProt:
A0A1P8UQN5
LinkDB
All DBs
Position
complement(696074..698572)
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AA seq
832 aa
AA seq
DB search
MNKCRTALPTAGPSRYFRPMSSFDDMDAFEGASLSARAMAARPAPYLDDLNPAQREAVLQ
MDGPVLMLAGAGTGKTKALTARIVHLLMSGNARANEILAVTFTNKAAREMKERVGRMLGQ
QIEGMPWLGTFHAICVKLLRRHAELAGLKSNFTILDTDDQIRLLKQLLSLNNIDEKRWPA
RQLASLIDHWKNRAWTPSKVPASEAGAFNHRGTELYEQYQARLRELNACDFGDLLLHVVT
IFQAHPDVLAQYQRWFRYILVDEYQDTNVAQYLWLRLLAGGHKNICCVGDDDQSIYGWRG
AEVGNILRFEKDFPGAHVVRLEQNYRSTPHILAAASGVIRGNEGRLGKELWTQAEEGEKV
RLIGHWDGEEEARWIGEEIESLQKGTRGLRQYSLDDIAILVRASHQMRAFEDRFLTIGLP
YRVIGGPRFYERMEIRDAMAYFRLVVSPDDDLAFERIVNTPKRGLGDKAQQTIQATAREF
GVSLIEGARIAVEEERLRGKGAGQLRMLCENLARWRETMLGPVLRPGEAEDSADVIDDEP
AFLVGETRRGTPELSHMELAEVILDESGYTAMWQNDKTPEAPGRLENLKELVKALEQFEN
LQGFLEHVALIMDNESEEAGAKVSIMTLHAAKGLEFPCVFLPGWEDGLFPSQRSMDESGL
KGLEEERRLAYVGITRAEELCTISFAGNRRVFGQWQSALPSRFIDELPEAHVEVLTPPGL
YGGGYGAAAAYGGGSGLETRAAEANVYNSPGWKRLQERSSQRPVSQPRESRNTVIDLQAV
SAFEMGQRVFHQKFGYGEITGIEGDKLEIAFEKSGVKKVVARFVHAEDDVPF
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaatgcagaacggcccttcccaccgccgggccgtcgcgctattttcgccccatg
agcagtttcgatgacatggacgccttcgaaggcgcgtcgctgtcggcccgcgccatggcg
gcacggcccgcgccctatctcgacgacctgaatccggcgcagcgcgaggcggtgttgcag
atggacgggccggtgctgatgctggccggcgcgggcaccggcaagaccaaggcgctgacc
gcgcggatcgtgcatcttctgatgagcggcaatgcgcgcgcgaacgagatcctcgcggtg
accttcaccaacaaggccgcgcgcgagatgaaggagcgggtggggcggatgctcggccag
cagatcgagggcatgccctggctcggcaccttccatgcgatctgcgtcaagctgctgcgc
cgccatgcggagctggccgggctcaagagcaatttcaccattctcgataccgacgatcag
atccgcctgctgaaacagctgctctcgctcaacaatatcgacgaaaagcgctggccggcg
cggcagcttgcctcgctcatcgaccactggaagaaccgcgcctggacgccctccaaggtg
cccgcctccgaggctggcgccttcaaccatcgcggcaccgagctttacgagcagtaccaa
gcccgtctgcgcgaactcaatgcctgcgatttcggcgacctgctgctgcatgtggtgacg
atctttcaggcgcatccggatgtgctggcgcagtatcagcgctggttccgctacatcctc
gtggacgagtatcaggataccaacgttgcgcagtatctctggctgcggctgctggccggg
ggacacaagaacatctgctgcgtcggcgatgacgaccagtcgatctatggctggcgcggt
gccgaggtcggcaacatcctgcgctttgaaaaggatttccccggcgcccatgtggtgcgg
ctggaacagaattaccgctcgaccccgcatatcctcgctgccgcgtccggcgtgatccgc
ggcaatgagggtcggctgggcaaggagctctggacccaggccgaggagggcgagaaggtc
cgcctcatcggccactgggacggcgaggaagaggcgcgctggatcggcgaggagatcgag
tcgctgcaaaagggtacgcgcgggctgcggcaatattcgctcgacgacatcgccattctg
gtgcgtgcctcgcatcagatgcgcgccttcgaggaccggttcctcaccatcggtctgccc
tatcgcgtcatcggcggcccgcgcttttacgagcggatggagatccgcgacgccatggcc
tatttccggctggtggtctcgcccgatgacgatctcgccttcgagcgcatcgtcaacacc
cccaagcgcggccttggcgacaaggcgcagcagaccattcaggcgacggcgcgggaattc
ggcgtgtcgctgatcgagggcgcccgcatcgcggtggaggaggagcggctccggggcaag
ggcgccggccagctgcggatgctctgcgaaaatctggcgcgctggcgcgagaccatgctg
gggccggtgctgcgcccgggcgaggccgaagacagcgccgatgtgatcgacgacgagccc
gcctttttggtgggcgagacccggcgcggcacgccggagctcagccatatggagctggcc
gaggtcattctcgacgaatccggctacacggcgatgtggcagaacgacaagacgcccgag
gcgccgggccggctggagaacctcaaggagctggtcaaggcgctggagcagttcgagaac
cttcaggggttcctcgaacacgtcgcgctgatcatggacaatgagagcgaggaggccggc
gccaaggtctcgatcatgacgctgcacgcggccaaggggctggaattcccctgcgtcttc
ctgccgggctgggaggacgggctgttcccgtcgcagcgcagcatggacgagagcgggctg
aaggggctcgaggaggagcggcggctggcctatgtcgggatcacccgggccgaggagctc
tgcacgatctccttcgccggcaaccgccgggtgttcggccagtggcaatcggcgctgccg
tcgcgtttcatcgacgagctgcccgaggcgcatgtggaggtgctgacgccgccggggctc
tatggcggcggctacggcgcagcggcggcctatggcggcggatcggggctggaaacgcgg
gcggcggaggccaatgtctacaattccccgggctggaagcgcttgcaggaacgctcgtcg
cagcgcccggtgagccagccgcgcgaaagccgcaatacggtgatcgaccttcaggcggtc
tcggccttcgagatgggccagcgggtgtttcaccagaaattcggttatggcgagatcacc
gggatcgagggcgacaagctggagatcgccttcgagaaatccggggtgaagaaggtggtc
gcgcgcttcgtgcatgcggaggacgacgtgccgttctga
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