Salipiger abyssi: Ga0080574_TMP1509
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Entry
Ga0080574_TMP1509 CDS
T04681
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
paby
Salipiger abyssi
Pathway
paby03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
paby00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Ga0080574_TMP1509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paby03021
]
Ga0080574_TMP1509
03400 DNA repair and recombination proteins [BR:
paby03400
]
Ga0080574_TMP1509
Enzymes [BR:
paby01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Ga0080574_TMP1509
Transcription machinery [BR:
paby03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Ga0080574_TMP1509
DNA repair and recombination proteins [BR:
paby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Ga0080574_TMP1509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Glyco_hydro_65C
Motif
Other DBs
NCBI-ProteinID:
APZ51843
UniProt:
A0A1P8UR10
LinkDB
All DBs
Position
840453..841469
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AA seq
338 aa
AA seq
DB search
MIHKNWAELIKPTQLEVRPGADPTRVATVVAEPLERGFGLTLGNALRRVLLSSLQGAAIT
SVQIDNVLHEFSSVAGVREDVTDIVLNLKGVSLRMEVEGPKRLSINAKGPGVVTAADIAE
TAGIDVLNKDHVICHLDDGADFYVELTVNTGKGYVSADKNKPEDAPIGLMPIDAIYSPVK
KVAYEVQPTREGQVLDYDKLTMKIETDGSVTPEDAIAYAARILQDQLSIFVNFEEPESAS
RQDDDDGLEFNPLLLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKS
LNEIKEVLSSMGLHLGMDVEDWPPDNIEDLAKKLEDQF
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgatccacaagaattgggctgaactgatcaagccgacccagctggaggttcgccccggc
gcagacccgacccgcgtggccacggtcgttgccgaaccgctggagcgcggctttggcctg
acgctgggcaacgccctgcgccgggtgctgctgtcgagccttcagggcgcggccatcacc
agcgtgcagatcgacaacgtgctgcacgagttttcgtccgtcgccggtgtgcgcgaagat
gtgacggatatcgtcctgaacctcaagggcgtttcgctgcgtatggaagtcgaggggccc
aagcgcctgtcgatcaacgcaaaaggccccggcgtcgtgaccgctgccgacatcgcggaa
accgccggcatcgatgttctgaacaaggaccacgtgatctgccacctcgacgacggtgcg
gatttctacgtggaactgaccgtcaacaccggcaagggctatgtctcggcagacaagaac
aagccggaagacgcgcccatcggcctgatgccgatcgacgcgatctattcgccggtcaag
aaggtcgcctatgaggtgcagccgacccgtgagggccaggtgctggactatgacaagctg
accatgaagatcgaaaccgacggctcggtcactcccgaggacgcgatcgcctacgcggca
cgcatccttcaggaccagctgtcgatcttcgtcaacttcgaagagcccgaaagcgcctcg
cgtcaggacgacgacgacggtctggaattcaacccgctcctcctcaagaaggtggacgag
ctggagctttccgtgcgttcggccaactgcctgaagaacgacaatatcgtttatatcggc
gacctgatccagaagaccgaagccgagatgctccgcaccccgaacttcggccgcaagtcg
ctgaacgagatcaaggaagtgctgtcctccatgggtctgcacctcggcatggatgtcgag
gactggccgccggacaacatcgaggatctcgccaagaaactggaagaccagttttaa
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