Salipiger abyssi: Ga0080574_TMP1550
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Entry
Ga0080574_TMP1550 CDS
T04681
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
paby
Salipiger abyssi
Pathway
paby03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
paby00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Ga0080574_TMP1550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paby03021
]
Ga0080574_TMP1550
03400 DNA repair and recombination proteins [BR:
paby03400
]
Ga0080574_TMP1550
Enzymes [BR:
paby01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Ga0080574_TMP1550
Transcription machinery [BR:
paby03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Ga0080574_TMP1550
DNA repair and recombination proteins [BR:
paby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Ga0080574_TMP1550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
APZ51884
UniProt:
A0A1P8UR39
LinkDB
All DBs
Position
complement(873799..878055)
Genome browser
AA seq
1418 aa
AA seq
DB search
MNQELTNNPFNPLTPPKVFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPCAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLTYGQMLTEDEFLDAQDQYGMDAFT
ANIGAEAIREMLAAIDLEAEAEQLRMDLKEATGELKPKKIIKRLKVVESFLESGNRPEWM
ILTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYTTIMREGMKGEGMAFSSIEEVEHAL
TAGEVHLHAKITCRVKQIDETGQEIVKRYETTPGRVRLGALLPMNAKAPFELVNTLLRKK
DVQRVIDTVYRYCGQKESVIFCDQIMSMGFKEAFKAGISFGKDDMVIPETKWDLVEETRE
QVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDKVTDAMMNTISANKRAEDGSEMEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRMRDCGTDRAITAEAAVNDGEVVASLGERVLGRV
AAEDIMRPGTDEVLIREGQLIDERMSDAIEEAAVQTARIRSPLTCEAEEGVCAMCYGRDL
ARGTMVNTGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASQEGIIEFENAS
TLENAIGETLVMGRNMKLRIMGEDGAERASHKLGYGTKLFVKEGETVQRGGKLFEWDPYT
LPIIAEADGIARHVDLVNGLAVRDETDEATGMTQKIVVDWRAAPKGNELKPEIILMDADG
EPVRNAAGNPITYPMSVDAILSCEDGQEIKAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGKDYKNKRRIAIEPADDTLETKEYMIPKGKHIPVVEGDYVQ
KGDYIMDGNPAPHDILAIMGIEALANYMIDEVQDVYRLQGVKINDKHVEVIVRQMLQKWE
ITDSGDTTLLKGEHVDKAEFDAANAKAISKNGRPAEGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKKDKLVGLKENVIVGRLIPAGTGGATQRVRRIATERDGKVIEVKRA
EAEAAAALAAPDADTSGNDVIGGDEFDNLVVDTPESRE
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgacgaacaacccgttcaacccgctgaccccgcccaaggtgttcgac
gagatcaaggtctcgctggcctcgcccgagcggatcctcagctggtcctacggcgagatc
aaaaagcccgagacgatcaactaccgcacgttcaaacccgagcgtgacggcctcttctgc
gcgcggatctttggcccgatcaaggattacgaatgcctctgcggcaagtacaagcgcatg
aaatatcgcggcgtcgtctgcgagaaatgcggcgtggaagtcacgctgcaaaaggtccgc
cgcgagcgcatgggccatatcgagctggccgcgccctgcgcccatatctggttcctcaag
tcgctgccctcgcgcatcggtctgatgctggacatgacgctgcgcgatctggagcgtgtg
ctctatttcgaaaactacgtggtgatcgagccgggcctgaccgacctgacctatggccag
atgctcaccgaggacgagttcctcgacgcgcaggaccagtacggcatggatgccttcacc
gccaatatcggcgccgaggcgatccgtgaaatgctggcggccatcgacctcgaagccgag
gccgagcagctgcgcatggacctcaaggaggccaccggcgagctgaagcccaagaagatc
atcaagcgcctgaaagtggtggagagcttcctcgagtcgggcaaccgtccggaatggatg
atcctcaccgtgatcccggtcattccgccggagctgcgcccgctggtgccgctggacggt
ggccgcttcgcgacctccgacctcaacgacctgtaccgccgggtgatcaaccggaacaac
cgcctcaagcggctgatcgagctgcgcgcgccggacatcatcgtccgcaacgaaaagcgg
atgcttcaggaagccgtcgacgcgctcttcgacaacggtcgtcgtggccgcgtgatcacc
ggtgccaacaagcgtccgctgaaatcgctcagcgacatgctgaaaggcaagcagggccgt
ttccgtcagaaccttctcggcaagcgggtcgacttctcgggccggtcggtcatcgtgacg
ggcccggaactgaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactcttc
aagcccttcatctattcgcggcttgaggccaagggcctttccagcaccgtgaaacaggcg
aagaagctggtggagaaagagcgtcccgaggtctgggatatccttgacgaggtcatccgc
gagcacccggttctgctgaaccgcgcgcccacgctgcaccgtctcggcatccaggccttc
gagcctcagctcatcgagggcaaggcgatccagctgcacccgctcgtctgttcggcgttc
aacgccgacttcgacggcgaccagatggccgtgcacgtgccgctttcgctggaagcgcag
ctcgaagcgcgcgtcctgatgatgtccacgaacaacgtgctgtcgccggccaacggtgcg
ccgatcatcgtgccgtcgcaggatatgatcctgggcctgtactacaccaccatcatgcgc
gaaggcatgaagggcgagggcatggccttctcctccatcgaggaggtcgagcacgcgctg
accgcgggcgaggtgcatctgcacgccaagatcacctgccgggtcaagcagatcgacgag
accggccaggagatcgtcaagcgttacgagaccacgccgggccgcgtgcgtctgggcgcg
ctgctgccgatgaacgccaaggcgccgttcgagctggtcaacacgctgctgcgtaagaag
gacgtgcagcgggtcatcgacaccgtctaccgctattgcggtcagaaggagtcggtcatc
ttctgtgaccagatcatgtccatgggcttcaaggaggcgttcaaggcgggcatctccttc
ggcaaggacgacatggtcattcccgaaaccaagtgggatctggtcgaagagacgcgcgag
caggtcaaggacttcgaacagcagtacatggacggcctgatcacccagggcgaaaagtac
aacaaggtcgtggacgcctggtcgaaatgtaacgacaaggtcaccgacgccatgatgaac
accatctcggcgaacaagcgcgccgaggatggctccgagatggaacccaactcggtctac
atgatggcgcactccggtgcccgtggctcggtcacgcagatgaagcagctgggcgggatg
cgcggcctgatggcgaagccgaacggcgacatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgaccgttcttgaatacttcaactcgacccacggcgcgcggaaaggtctg
tcggacaccgctctgaagacggcgaactcgggttacctgacccgccgtctggtggacgtg
gcgcaggactgcatcgtgcgcatgcgcgactgcggcaccgaccgcgcgatcaccgccgaa
gcagcggtcaacgacggcgaagtggtggcgagcctcggcgagcgcgttctgggccgtgtc
gcggccgaggacatcatgcgcccgggcaccgacgaggtgctgatccgcgagggtcagctc
atcgacgagcgcatgtccgacgccatcgaggaggccgcggtgcagaccgcgcgcatccgc
tcgccgctgacctgtgaggccgaagagggcgtctgcgccatgtgctacggtcgcgacctg
gcgcgcggcacgatggtcaacaccggcgaggcggtcggcatcatcgcggcgcagtccatc
ggcgagcccggcacacagctgacgatgcggaccttccacatcggcggcgtggcgcagggt
ggtcagcagtccttcctcgaagcctcgcaagagggcatcatcgagttcgagaacgcctcg
acgctcgagaacgccatcggcgagaccctggtcatgggccgcaacatgaagctgcggatc
atgggcgaggacggggccgagcgcgccagccacaagctgggctacggcaccaagctcttc
gtcaaggagggcgagaccgtccagcgcggcggcaagctcttcgagtgggatccctacacg
ctgccgatcatcgccgaggcggatggtatcgcccggcatgtcgacctggtgaacgggctt
gccgtgcgcgacgagaccgacgaagccaccggcatgacccagaagatcgtggtcgactgg
cgggcggcgcccaagggcaacgagctcaagccggagatcatcctgatggatgccgatggc
gagccggtgcgcaacgcggcgggcaacccgatcacctacccgatgtcggtggacgcgatc
ctctcctgtgaagacgggcaggagatcaaggccggtgacgtcgtggcgcggatcccgcgc
gaaggtgcgaagaccaaggacatcaccggcggtctgccgcgtgtggccgaactcttcgag
gcgcgccgtcccaaggaccacgccatcatcgccgagatcgacggttatgtgcgctttggc
aaggactacaagaacaagcgccgcatcgccatcgagcctgccgacgacacgctggagacc
aaggaatacatgatcccgaaagggaaacacattccggtcgtcgaaggcgattatgtccag
aagggcgactacatcatggacggcaacccggcgccgcacgacatcctcgccattatgggg
atcgaggcgctggccaactacatgatcgacgaggtgcaggacgtgtaccgtctgcaaggc
gtgaagatcaacgacaagcacgttgaggtcatcgtccggcagatgctgcagaagtgggaa
atcaccgacagcggcgacacgaccctgctcaagggcgagcatgtggacaaggccgagttc
gacgcggcgaatgccaaggcgatctccaagaacggtcgtcccgccgaaggtgagccgatc
ctgctcggcatcaccaaggcgtcgctccagacccgctccttcatctcggcggcctccttc
caggagaccacgcgggtgctcaccgaagcctcggtgcagggcaagaaggacaagctggtc
ggcctcaaggagaacgtcatcgtgggccgcctgatcccggcgggcaccggtggcgcgacc
cagcgggtgcgccgcatcgccaccgagcgcgacggcaaggtgatcgaggtcaagcgcgcc
gaggcggaagccgcagcagcgctggccgcgcccgatgcggacacgtcgggcaacgacgtg
atcgggggcgacgagttcgacaacctcgtggtggatacgccggaaagccgcgaataa
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integrated database retrieval system
