Salipiger abyssi: Ga0080574_TMP2222
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Entry
Ga0080574_TMP2222 CDS
T04681
Name
(GenBank) DNA helicase/exodeoxyribonuclease V, subunit A
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
paby
Salipiger abyssi
Brite
KEGG Orthology (KO) [BR:
paby00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paby03400
]
Ga0080574_TMP2222
Enzymes [BR:
paby01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ga0080574_TMP2222
DNA repair and recombination proteins [BR:
paby03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
Ga0080574_TMP2222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
DUF4992
Motif
Other DBs
NCBI-ProteinID:
APZ52556
UniProt:
A0A1P8UT97
LinkDB
All DBs
Position
1597241..1600618
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AA seq
1125 aa
AA seq
DB search
MKRDEATEAQVRAARPDCSTWLSANAGSGKTRVLTDRVARLLLDGVLPEHILCLTYTKAA
ATEMQNRLFRRLGAWAMLEDEALRDELRQLGLDGPLPPDRLAGARTLFARAIETPGGLRI
QTIHSFCASLLRRFPLEAGVSPQFHEMEDRAAQILRADVLDRLSEGAHGHLVADLAGWLS
DEPEKLLAEICGNRDAFLPARSREALFALYDLAPDDSREALLARVFLGGEMALLEAMVPA
LSGSGANDQKAAAQLARITAPDLDALEILESVLLTGKGAKEPFTAKLGKFPTKGLQNGAL
APHMGALEDLMRRVESARETRLALAAAERELALHRFAQAFLPAYEAEKQRRGWLDFDDLV
TRARDLLSDDRVAEWVLYRLDGGIDHILVDEAQDTSPVQWQVIERLAHEFTSGEGARADV
RRTIFVVGDKKQSIYSFQGADPREFDRMCDEFAERLKRTDAPLSRMMLEYSFRSAEPILR
LVDNTFDGREAAGFSQDQKHRAFKSEMPGRVDLWPHVEPGKEEEDETDWFEPVDRVGERH
HAVILANRVAGFIEKTLGTPLPEEIGFSGQYRTRPAHAGDFLILVRGRGTLFTEIIRACK
QRALPIAGADRLKVMSELAVKDIGALLSFLATPEDDLSLATALRSPLFGLGEQDLFTLAQ
PRDGYLWAALRGNRDAYPQVMAVLDDLRSKADFLRPFDLIERILTRHEGRQKLLGRLGEE
AEDGINALIGQALAYEQTEVPSLTGFLEWMQTDDLEIKRAPDSAGARIRVMTVHGAKGLE
APIVILPDCAEPNAQIRDSLLDGDTGTVWKASAEAQPRVQAEALERAKDANQRERDRLLY
VALTRAEKWLVVAAAGRLGAQGNAWYDQVRLGMERSGAEPATFDFGAWGADEGLRLGQAD
WSALPHEPAPEILRQEAALPDLFRQPAPLPGALLESVSPSALGGAKALAGEDGEDVEAAM
LRGTVLHLLLEHLSALPPDARPAAVPHVLAIAEELPEDTETLASEALAVLAADTLTPFFA
PDSLAEVPLTAEIAPVGRIHGIIDRLIVTPDKVIAVDFKSNRTVPATAADTPEGLLRQMG
AYAAALAQLYPGREIETGLIWTATQNYMSLPHDLVSAALARATTA
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcgacgaggccaccgaagcgcaggtacgcgccgcgcgccccgactgttcgacc
tggctctcggccaatgccggctcgggcaagacccgggtgctgaccgaccgggtggcgcgg
ctgctgctcgacggggtgctgccggaacacatcctgtgcctgacctacaccaaggccgcc
gcgaccgagatgcagaaccggctgttccgccggctcggcgcctgggcgatgctggaggac
gaggcgctgcgcgacgagctgcgccagctcgggctcgacgggccgctgccgcccgaccgg
ctggctggcgcccgaacgctctttgcccgcgccatcgagacgccgggcgggctgcgcatc
cagaccattcactccttctgcgcctctctgctgcggcgctttccgctggaggccggcgtc
tcgccgcagttccacgagatggaggaccgcgccgcgcagatcctgcgtgccgatgtgctc
gaccggctgtccgagggcgcccacggtcatctggtcgccgatctggccggctggctgagc
gacgagccggagaagcttctggccgaaatctgcggaaacagagacgcatttctgcccgcc
cgctcacgcgaggcgctgtttgcgctctacgatctcgcccccgacgacagccgcgaggcg
ctgctggcgcgggtgttcctcggcggcgaaatggcgctgctggaggcgatggtgccggcg
ctctccggatcgggcgccaacgaccagaaagccgccgcgcagttggcgcgtatcaccgcg
cccgatctcgacgcgctggagatcctcgagtcggtactgctgaccggcaagggcgccaag
gagccgttcactgccaagctcggaaaattccccaccaaggggctgcaaaacggcgcgctg
gcgccgcatatgggcgcgctcgaagacctcatgcgccgggtggaatccgcccgcgagacc
cggctcgcgctggccgccgccgagcgcgagctggcgctgcaccgcttcgcgcaggcgttt
ctgcccgcctatgaggccgagaaacagcggcgcggctggctcgatttcgacgatctggtg
acccgcgcgcgcgatctgctgtccgatgaccgggtggcggaatgggtgctttaccggctc
gatggcggcatcgaccacattctggtggacgaggcgcaggacaccagcccggtgcaatgg
caggtgatcgagcggctggcgcatgagttcaccagcggcgagggcgcgcgcgccgatgtg
cggcgcacgatctttgtggtgggcgacaagaaacagtcgatctacagctttcagggcgcc
gatccacgcgaattcgaccgcatgtgcgacgagttcgccgagcggctgaaacgcaccgac
gcgccgctgagccggatgatgctggaatacagctttcgctcggccgagccgatcctgcgg
ctggtcgacaacacctttgacgggcgcgaggcggcggggttttcgcaggaccagaaacac
cgcgccttcaaatccgagatgcccggacgggtggatctctggccgcatgttgagcccggc
aaggaggaggaagacgagaccgactggttcgagccggtcgaccgggtgggcgagcgtcat
cacgcggtgatcctcgccaaccgcgtcgcggggttcatcgaaaagaccctcggcacgccg
ctgcccgaagagatcggcttcagcggccagtaccgcacccgtcccgcccatgccggcgat
ttcctgatcctggtgcgcgggcgcggcacgctctttaccgagatcatccgcgcctgcaag
cagcgcgccctgcccatcgccggcgccgaccggctcaaggtgatgtccgagctggcggtg
aaggatatcggtgcgctgctgagctttctcgccacgcccgaggacgacctgtcgctcgcc
accgcgctgcgctcgccgctcttcggtctgggcgagcaggatctgttcaccctggcgcag
ccgcgcgacggctatctctgggccgctttgcgcggaaacagagacgcatatcctcaggtg
atggcggtgctcgacgatctgcggagcaaggcggatttcctgcgccccttcgatctgatc
gagcgcatcctgacccggcacgagggccggcagaagctgctcggacggctgggagaagag
gccgaggacggcatcaatgcgctgatcgggcaggcgctggcctatgagcagaccgaggtg
ccctcgctcaccgggttcctggaatggatgcagaccgacgatctggagatcaagcgcgcg
cccgacagcgccggggcacggatcagggtgatgacggtgcatggcgccaaggggctggaa
gcgcccatcgtcatcctgccggactgcgccgagcccaatgctcagatccgcgacagcctg
ctcgatggcgacaccggcaccgtgtggaaggccagcgccgaggcgcagccacgggtgcag
gccgaggcgctggagcgggcgaaagacgccaatcagcgcgaacgcgaccggctgctttac
gtggcgctgacccgggcggagaaatggctggtggtcgccgccgccggcaggctgggggcg
cagggcaatgcctggtacgatcaggttcggctgggcatggagcgctccggcgcggagcct
gccaccttcgatttcggcgcctggggcgcggatgaggggctgcggctggggcaggccgac
tggagcgcgctgccgcacgaacccgcgccggagatcctgcggcaggaggcggccctgccg
gatcttttccgccagcccgcgccgctgccgggcgctctgttggaatccgtctcgccctcg
gcgctcggcggcgccaaggcgctggccggggaagacggcgaggatgtcgaggccgccatg
ctgcgcggcaccgtgctgcacctgctgctggaacacctctcggccctgccccccgatgcc
cggcccgccgccgtgccgcatgtgctggccatcgccgaggagctgcccgaggacaccgaa
acgcttgcgagcgaagcgctggcggtgctggccgcagacacgctgacgccgttctttgcc
cccgacagcctcgccgaagtgccgctcaccgccgagatcgcgccggtcgggcgcattcac
ggcatcatcgaccggctgatcgtcaccccggacaaggtgatcgcggtggatttcaaatcc
aaccgcaccgtgccggccaccgcagcggacacgcccgaggggctgctgcgccagatgggc
gcctatgcggcggcgctggcccagctctatccggggcgcgagatcgaaaccgggctgatc
tggacggcgacgcagaactatatgtcactgccacacgatcttgtgtctgcggcactggcg
cgcgctacgaccgcttga
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