Salipiger abyssi: Ga0080574_TMP2343
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Entry
Ga0080574_TMP2343 CDS
T04681
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
paby
Salipiger abyssi
Pathway
paby03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
paby00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Ga0080574_TMP2343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paby03400
]
Ga0080574_TMP2343
Enzymes [BR:
paby01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Ga0080574_TMP2343
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Ga0080574_TMP2343
DNA repair and recombination proteins [BR:
paby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Ga0080574_TMP2343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Nop14
Motif
Other DBs
NCBI-ProteinID:
APZ52677
UniProt:
A0A1P8UTH3
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All DBs
Position
1713325..1714176
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AA seq
283 aa
AA seq
DB search
MPELPEVETVRRGLAPVMEGQRIALARVNRPDLRWPFPERMAERLTGARVERLRRRSKYI
LADLDTGETLLIHLGMSGRMLVSGDALGRFVHDHPAPEKHDHVVFDMADGARVTFNDPRR
FGAMDLMGTETAEAHPLLAALGPEPLGNAFSESHLVAALKGRNMPVKSALLDQKIVAGLG
NIYVCEALFRAGIHPGRRVSRISEKRLAALVPVIRQVLAEAIEAGGSSLRDFRQADGELG
YFQHSFDVYGREGQPCRTPGCTNSVHRIVQSGRSSFYCPGCQR
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactgcccgaggtggaaaccgtgcgccgcggactggccccggtgatggaaggc
cagcggatcgcgctggcgcgggtgaaccggcccgatctgcgctggcccttccccgagcgc
atggccgagcggctcaccggcgcgcgggtggagcggctgcggcggcgctcgaaatacatc
ctggcggatctcgacaccggcgaaaccttgctgattcacctcggtatgtccgggcggatg
ctggtctcgggcgatgcgttgggccgcttcgtgcacgatcacccggcgccggagaagcac
gatcacgtcgtctttgacatggcggacggggcgcgggtgaccttcaacgacccgcgccgc
ttcggggcgatggatctgatggggaccgagaccgccgaggcgcatccgctactggcggcg
ctggggccggagccgctgggcaacgcgttcagcgaatcccatctggtcgcggcgctgaaa
gggcgcaacatgccggtgaaatcggcgctgctcgatcagaaaatcgtcgccgggctgggc
aatatctatgtctgcgaggcactgtttcgcgccggcatccatccgggacgccgcgtcagc
cggatctcggaaaagcgcctggcggcgctggttccggtcatccggcaggtgctggcggag
gccatcgaggcgggcggatcgagcctgcgcgacttccgccaagccgatggcgagcttgga
tatttccagcacagcttcgatgtttacgggcgcgaggggcaaccctgccggacaccggga
tgcacaaattccgtgcatagaatcgtgcaatccgggcgctcgtccttctactgtccgggc
tgtcaaagatag
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