Salipiger abyssi: Ga0080574_TMP2857
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Entry
Ga0080574_TMP2857 CDS
T04681
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
paby
Salipiger abyssi
Pathway
paby03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paby00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ga0080574_TMP2857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paby03019
]
Ga0080574_TMP2857
03400 DNA repair and recombination proteins [BR:
paby03400
]
Ga0080574_TMP2857
Enzymes [BR:
paby01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ga0080574_TMP2857
Messenger RNA biogenesis [BR:
paby03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ga0080574_TMP2857
DNA repair and recombination proteins [BR:
paby03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Ga0080574_TMP2857
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
Cas3-like_C_2
Rhodanese
Motif
Other DBs
NCBI-ProteinID:
APZ53191
UniProt:
A0A1P8UUW4
LinkDB
All DBs
Position
2251181..2253235
Genome browser
AA seq
684 aa
AA seq
DB search
MPRDTVPGEALLKEVFGFDAFRPGQGEIVDAVARGDNVLAIMPTGGGKSLCYQLPALMRG
GVTVVISPLIALMRDQVRALREAGVAAGALTSGNTQEETDAVWDMLSEGTLKLLYLAPER
LASGGAQRMLAQAGVSLIAVDEAHCVSQWGHDFRPDYLRIGELRRALGVPLAAFTATADQ
ETQGEIVQRLFDGEAPQTFLRGFDRPNIHLAFKPKDSPRTQILRFAAARKGRSGIVYCGT
RAKTEGIAQALREDGHSACFYHGGMEAEARRAVEERFAKEDGLIVVATVAFGMGVDKPDI
RWVAHADLPKSIEAYYQEIGRAGRDGAPAETMTLYGADDIRLRRAQIDEGMAPPERRSAD
HARLNALLGLAEALGCRRQQLLRYFGEASEPCGNCDLCDKPPEVFDGTEAVRKALSAALR
TGENFGAGHLIDILIGNETDKVRQRRHDQLPTFGVGRDLKKGQWQAVFRQMMGRDLVRPD
PERHGALVMTDDALPILRGEQTIQLRRDVIDRAAERRPQVKTLVNEEDAPLLSALKAKRR
ALAEAASLPAYMIFPDRTLIEMAEGRPATLDDMARINGVGAKKLERYGAEFLSVITGAEE
EMHPTRRKLAGREAGSTYDALMTVQADLARGADGTEKPLSCSASLLAKVAQMRPGQPDEM
ARLLGERRFDRFGAAFLDVLSEAG
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgccccgcgatactgtgcccggtgaggcgctgctgaaagaagtcttcggcttcgacgcc
ttccgtcccggtcagggcgagatcgtcgatgccgtggcgcggggcgacaatgtgctggcc
atcatgcccactggcggcggcaagtcgctgtgctaccagcttcccgcgctgatgcggggc
ggggtcaccgtggtgatctcgccgctgattgcgctgatgcgcgaccaggtgcgtgcgctg
cgcgaggccggggtggccgccggggcgctgacctcgggcaatacccaggaagagaccgat
gcggtctgggacatgctgtcggagggcacgctcaagctgctctatctggcgccggagcgg
ctggcctcgggcggcgcgcagcggatgctggcacaggcgggggtgagcctcatcgccgtg
gacgaggcgcattgcgtcagccagtggggtcatgacttccgcccggattacctgcgcatc
ggcgagctgcgccgcgccctgggcgtgccgctggccgcctttaccgccaccgccgatcag
gagacgcagggcgagatcgtccagcggctgtttgacggggaggcgccgcagaccttcctg
cgcggtttcgaccggcccaatatccatctcgccttcaagcccaaggacagcccgcgcacg
cagatcctgcgctttgccgccgcgcgcaagggccgctcgggcatcgtctattgcggcacc
cgcgccaagaccgagggcatcgcccaggcgctgcgtgaggacgggcacagcgcctgtttc
taccacggcggcatggaggcggaggcccgccgcgccgtcgaggagcgtttcgccaaggag
gacgggctgatcgtggtggcgacggttgccttcggcatgggggtcgacaagcccgatatc
cgctgggtcgctcatgcggatctgccgaaaagcatcgaggcctattatcaggagatcggc
cgtgccgggcgcgacggtgccccggccgagaccatgacgctctacggcgccgacgatatc
cgcctgcgccgcgcccagatcgacgagggcatggcgccgccggaacgccggtcggcggat
cacgcaaggctcaacgcgcttctggggctggccgaggcgctgggctgccggcgccagcag
ctcctgcgctatttcggcgaggcctccgagccctgcggcaattgcgatctctgcgacaag
ccgccggaggtgttcgacggcaccgaggcggtgcgcaaggcgctgtcggcggcgctgcgg
acgggcgagaatttcggcgcgggtcatctcatcgacattctgatcggcaacgagaccgac
aaggtgcgccagcgccggcacgatcagttgcccacattcggtgtgggccgcgatctcaaa
aagggccagtggcaggcggtgttccggcagatgatggggcgcgatctcgtgcgtcccgat
cccgaacgccacggcgcgctggtgatgaccgacgacgccctgccgatcctgcgcggtgag
cagaccatccagctccgccgcgatgtgatcgaccgcgctgccgagcgccgcccgcaggtc
aagacgctggtcaatgaagaggacgcgccgctgctttcggcgctcaaggccaagcgccgc
gcgctggccgaggcggcctcgctgcccgcctacatgatcttccccgaccgcaccctgatc
gagatggccgagggccggcccgccacgctcgacgacatggcgcggatcaacggggtgggg
gccaagaagctcgaacgctatggtgccgagttcctctcggtgatcaccggcgcggaggag
gagatgcacccgacccggcgcaagctggcggggcgcgaggcgggctcgacctatgatgcg
ctgatgacggtgcaggcggatctggcgcgcggtgcggacgggacggagaaaccgctctcc
tgttccgcctcgctgctggccaaggtggcgcagatgcggcccggccagcccgacgagatg
gcgcggctgctgggcgagcggcgtttcgaccggttcggcgccgcgtttctggacgttctg
agcgaggcgggctag
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