Salipiger abyssi: Ga0080574_TMP3087
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Entry
Ga0080574_TMP3087 CDS
T04681
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
paby
Salipiger abyssi
Pathway
paby03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paby00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ga0080574_TMP3087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paby03019
]
Ga0080574_TMP3087
03016 Transfer RNA biogenesis [BR:
paby03016
]
Ga0080574_TMP3087
Enzymes [BR:
paby01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Ga0080574_TMP3087
Messenger RNA biogenesis [BR:
paby03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Ga0080574_TMP3087
Transfer RNA biogenesis [BR:
paby03016
]
Prokaryotic type
tRNA degradation factors
Ga0080574_TMP3087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
APZ53421
UniProt:
A0A1P8UVJ8
LinkDB
All DBs
Position
2492629..2494782
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AA seq
717 aa
AA seq
DB search
MFNISKKSMQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLT
VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKHEVLVMCTVLSH
DLVNDPDIVAMIAASAALTISGVPFMGPIAGARVGFEDGEYVLNPTVDDMQGLRNNPEQR
LDLVVAGTKDAVMMVESEAYELTEDEMLGAVTFAHEQIQPVIDLIISLAESAAKEPFDFQ
PPDYSALYEVVKGLGEDKMRAAYAITDKQERVAAVSAAKEEIKSQLSEEQLEDANLGSAL
KKLESTVLRADVVKNKRRIDGRALDQVRPIVSETGVLPRTHGSSLFTRGETQAMVVTTLG
TGDDEQIIDALHGNFRSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPA
ATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDDGDWA
VLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMKQALAQAKEGRMHILGE
MSKALTEAAEFSVHAPRIEMMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGLIKI
ASPNGEAIQKAYDMIHSIVAEPEEGKVYKGKVVKIVDFGAFVNFFGKRDGLVHVSQIENR
RLNHPSDVLKEGQEVYVKLLGFDDRGKVRLAMKMVDQETGEELPPEAKKKKEEDAAE
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgttcaatatttcgaagaaaagcatgcagtggggggaggaaaccctcactctggaaacg
ggcaaggttgcccgtcaggccgacggatcggtgatcgccactctgggcgaaacctctgtc
atggccaacgtgacttttgcaaaagagccgaagcccggtcaggatttctttccgctgacc
gtgcattatcaggaaaaatactatgccgcgggcaaggtgcccggcggcttcttcaagcgc
gaggcgcgtccgaccgagaaggaaacgctgaccgcgcgcctgatcgaccgtccgatccgc
ccgctcttcgttcccggcttcaagcatgaagtgctggtgatgtgcaccgtgctgagccac
gatctggtcaacgatcccgacatcgtcgcgatgatcgccgcctccgccgcgctgaccatc
tcgggcgtgcccttcatgggcccgatcgccggtgcccgcgtcggtttcgaggatggcgag
tatgtgctgaacccgaccgtcgacgacatgcaagggctgcgcaacaaccccgagcagcgt
ctcgacctcgtggtcgccggcaccaaagacgccgtgatgatggtggaatcggaagcctac
gagctgaccgaagacgagatgctcggcgccgtgacctttgcgcatgagcagatccagccg
gtcatcgacctgatcatctcgctggccgaatcggccgcgaaagagcccttcgacttccag
ccgccggattactcggcgctgtacgaagtggtcaaaggcctcggcgaagacaagatgcgc
gccgcctatgcgatcaccgacaagcaggagcgcgtcgccgccgtttccgccgccaaggaa
gagatcaagtcccagctcagcgaagagcagctggaagacgccaatctcggctcggcgctg
aaaaagctggaatcgacggtgctgcgcgccgatgtggtgaagaacaagcgccgcatcgac
ggccgcgcgctggatcaggtgcgcccgatcgtgtcggaaaccggcgtgctgccgcggacc
cacggttcgtcgctcttcacccgtggcgagacccaggcgatggtcgtgaccacgctgggc
accggcgacgacgagcagatcatcgacgcgctgcacggcaatttccgctcgaacttcctg
ctgcattacaacttcccgccgtattcggttggtgaagtgggccgcgtcggctccccgggc
cgccgcgagatcggccacggcaagctggcatggcgcgcgcttcaggcggtgctgccggcg
gcgaccgatttcccctacacgatccgtgtggtgtcggagatcaccgagtcgaacggctcc
tcctcgatggcctccgtctgcggcggctcgctgtcgatgatggatgccggcgtgccgctc
aaggcgccggtggccggtgtggccatgggcctcgtgctcgaagacgatggcgactgggcc
gtgctgaccgacatcctcggcgacgaggatcacctcggcgacatggacttcaaggtcgcg
ggcaccgagaacggcatcacctcgcttcagatggacatcaaggttgcgggcatcacgccc
gagatcatgaagcaggcgctggcacaggccaaggaaggccggatgcacatcctcggcgag
atgtccaaggcgctgaccgaagcggcggaattctccgtgcacgcgccgcgcatcgagatg
atgcagatccccaccgacaagatccgcgaagtgatcggctcgggcggcaaggttatccgc
gagatcgtcgaagtgtcgggcgccaaggtcgacatcaacgacgagggcctgatcaagatc
gcctcgcccaacggcgaagccatccagaaggcctatgacatgatccactcgatcgtggcc
gagccggaagagggcaaggtctacaagggcaaggtcgtgaagatcgtcgatttcggcgcc
ttcgtgaacttcttcggcaagcgcgacggtctggtgcacgtgtcccagatcgagaaccgc
cgcctgaaccatccctcggacgtgctgaaggaaggccaggaggtctatgtgaagctgctc
ggctttgacgaccgtggcaaggtgcgtctggcgatgaagatggtcgaccaggaaaccggc
gaagagctgccgccggaagcgaaaaagaaaaaggaagaagacgccgctgagtaa
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