Salipiger abyssi: Ga0080574_TMP3237
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Entry
Ga0080574_TMP3237 CDS
T04681
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
paby
Salipiger abyssi
Pathway
paby03030
DNA replication
paby03430
Mismatch repair
paby03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
paby00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ga0080574_TMP3237
03430 Mismatch repair
Ga0080574_TMP3237
03440 Homologous recombination
Ga0080574_TMP3237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paby03032
]
Ga0080574_TMP3237
03400 DNA repair and recombination proteins [BR:
paby03400
]
Ga0080574_TMP3237
Enzymes [BR:
paby01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Ga0080574_TMP3237
DNA replication proteins [BR:
paby03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Ga0080574_TMP3237
DNA repair and recombination proteins [BR:
paby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Ga0080574_TMP3237
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
Scaffold
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
APZ53571
UniProt:
A0A1P8UVZ7
LinkDB
All DBs
Position
complement(2636494..2640054)
Genome browser
AA seq
1186 aa
AA seq
DB search
MADPRFIHLRVHTEYSLLEGAVRLKKLPGLCETMGMPAVAVTDTNNLFSALEFSVTASGA
GVQPIIGCQVDLQYVQPVPGERPRPPAPVVLLAQNERGYENLMKLNSCLYLRHDGQQEHV
TLEELEQYGAGLICLSGGPDGPVGRLLRENHRAAAQTLMTRLHQIYDDRLYVELQRHPGE
DGLPEAERLTERGHVEMAYEMGLPLVATNDVYFPKSDMYEAHDALICISEGAYVDQQEPR
RRLTAQHYLKTPQEMATLFADLPEAIENTVEIAKRCAFMTYKRAPILPKFADDEVEELRR
QANEGLQKRLAVIPHAVSPEDYQKRLDFELGIIEGMGFPGYFLIVADFIKWAKEHDIPVG
PGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIRYVQ
QKYGHDKVAQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSKMIPVEGVKPVSIEKALQD
EPRLREEARNEEVVDRLLTYGQQVEGLLRNASTHAAGVVIADRPTDELVPLYQDPRSDMP
ATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVNLILKDGRPIHVAADGTELYQPAEGGEN
QMNLIPLDDEKTYKLYADAKTVAVFQVESTGMMDALKRMKPTCIEDIVALVALYRPGPME
NIPVYCEVKNGLREITSVHPSIDHILAETQGIIVYQEQVMQIAQEMAGYSLGGADLLRRA
MGKKIKEAMDAERPKFEKGAAENGVEKKKATEVFDLLEKFANYGFNKSHAAAYAVVSYQT
AWLKANHPVEFMAGVMNCDIHLTDKLATYFYELKKGLKLGYTPPCVNRSQAMFDVADQKL
VYALGALKNVGVEAMQLVVAGRQDPDAGVTASNGEALDQVRGGREKPFVNLYDFARRVDL
KRVGKRPLEMLARAGAFDQLDRNRRRVFESLDALVAYSAAVHEQKGSAQVSLFGEAGDDL
PEPRLSPVPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRRDVMTLDDVEERARGGAC
IAKLAGVVAGRQERKSARGNRFAFAQLSDPTGAYEVTIFSETLEKSRDMLETGAKVVVTV
EATLESDQLKLLARSFGPVEHVVADAGASGLRIFIEEPGTVAQVASVLSRASEQMPKAGR
GPIRLCLTAAGLPGEVEMDLKQEFPVTPEIKGAVKSLDGVLAVEDF
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atggcagatccccgattcattcacctccgcgtccacaccgaatattccctgctcgaaggc
gccgtccggctgaaaaagctgccggggctctgcgagaccatgggcatgcccgccgtggcg
gtgaccgacaccaacaacctgttctcggcgctggagttttccgtgaccgccagcggcgcg
ggggtgcagccgatcatcggctgtcaggtcgatctgcaatatgtgcagccggttccgggc
gaacggcccaggccgcccgcccccgtcgtgcttctggcgcagaacgagcgcggctatgaa
aacctgatgaagctcaattcctgcctctatctgcgccatgacggccagcaggagcatgtg
acgctggaggagctggaacaatacggcgccgggctgatctgcctttccggcggcccggac
gggccggtcgggcggctcttgcgggaaaaccaccgcgccgcggcgcagacgctgatgacg
aggctgcaccagatctatgacgaccggctctatgtcgagctgcaacgccatcccggcgag
gacgggctgcccgaggcggaacggctgaccgagcgcggccatgtggagatggcctatgag
atggggctgccgctggttgccaccaacgatgtgtatttcccgaaatccgacatgtacgag
gcgcatgacgcgctgatctgcatctccgagggcgcctatgtcgaccagcaggaaccgcgc
cgccggctgaccgcgcagcattacctcaagaccccgcaggagatggcgacgctgtttgcc
gatctgcccgaggcgatcgagaacaccgtcgagatcgccaagcgctgcgccttcatgacc
tacaagcgcgccccgatcctgccgaaattcgccgatgacgaggtcgaggagctgcggcgc
caggccaatgagggcctgcaaaagcgcctggcggtgatcccgcacgcggtcagccccgag
gactaccagaagcggctcgatttcgaactgggcatcatcgagggcatgggctttcccggc
tactttctgatcgtggcagacttcatcaaatgggccaaggagcacgatatccccgtcggg
ccgggccggggctcgggcgccggctctctggtggcctatgcgcttaccatcaccgacctc
gacccgctgcgctattcgctgctcttcgagcgcttcctcaaccccgaacgggtctcgatg
cccgacttcgacatcgacttctgcatggaccgccgcgaagaggtgatccgctacgttcag
cagaaatacggtcatgacaaggtggcgcagatcatcaccttcggcgcgctgctgtcgaag
gcggcggtgcgcgatgtgggccgggtgttgcagatgccctatggccaggtcgaccggctg
tcgaagatgatcccggtggagggggtgaaacccgtctccatcgagaaggcgcttcaggac
gagccgcgcctgcgcgaggaggcgcgcaacgaggaggtggtcgaccggctgctgacctat
ggccagcaggtggaggggcttctccgcaacgcctcgacccacgccgccggggtggtgatc
gccgaccgcccgacagacgagctggtgccgctctatcaggatccgcgctcggacatgccg
gccacccagttcaacatgaaatgggtggaacaggcagggctggtgaagttcgacttcctc
ggcctcaagacgctgacggtgatccagaacgcggtgaacctgatcctcaaggacgggcgg
cccatccatgtggccgccgacggcacggagctttaccagcccgccgagggcggcgagaac
cagatgaacctcatcccgctggacgatgagaagacctacaagctctacgccgatgccaag
accgtcgcggtgttccaggtggaaagtaccggcatgatggatgcgctcaagcgcatgaag
cccacctgtatcgaggatatcgtggcgctcgtggcgctttaccgtccgggcccgatggaa
aacatcccggtctattgcgaggtcaagaacggcctgcgcgagatcacctcggtgcacccg
tcgatcgaccatatccttgccgagacccagggcatcatcgtctatcaggaacaggtgatg
cagatcgcccaggaaatggcgggatacagcctcggcggcgccgacctgctgcgccgcgcc
atgggcaagaagatcaaggaggccatggacgccgagcggccgaaattcgaaaagggcgcg
gcggagaacggcgtcgagaagaagaaggcgaccgaggtcttcgacctgctggagaaattc
gccaattacggcttcaacaaatcccacgccgccgcctatgcggtggtgagctaccagacg
gcgtggctcaaggccaaccacccggtggagttcatggccggggtgatgaactgcgatatc
catctcaccgacaagctcgcgacctatttctacgagctgaagaaggggctgaagctgggc
tatacgccgccctgcgtgaaccgcagccaggcgatgttcgacgtggccgaccagaagctg
gtctatgcgctgggggcactgaagaatgtcggcgtcgaggcgatgcagctggtggtggcc
gggcggcaggatccggatgcgggcgtcacggcatcaaacggcgaggccctggatcaagtc
cggggcgggcgtgagaaacctttcgtcaatctctacgatttcgcccggcgggtggacctg
aagcgggtcggcaagcggccgctggagatgctggcccgcgccggcgccttcgaccagctc
gaccgcaaccggcggcgggtcttcgagagtctcgatgcgctggtcgcctattcggcggcg
gtgcatgagcagaagggcagcgcgcaggtctcgctctttggtgaggccggcgacgatctg
cccgagccgcgcctgtcgccggtgcccgactggctgccggcagagcggctgagcgaggaa
ttcaaggccatcggcttctacctttcgggccatccgctcgacgattacatgccggcgctg
aaacggcgcgacgtgatgacgctggacgatgtcgaggagagggcccgcggcggcgcctgc
atcgccaagctggcgggcgtggtggccgggcggcaggagcgcaaatcggcgcgcggcaac
cgctttgcctttgcccagctttccgatccgaccggcgcctatgaggtgacgatcttttcc
gagacgctggagaaatcccgcgacatgctggagaccggcgccaaggtggtggtgaccgtc
gaggcgacgctggaatccgatcagctcaagcttctggcgcgcagtttcgggccggtcgag
catgtggtcgccgatgccggcgcctcggggctgcggatcttcatcgaggagccgggcacg
gtggcgcaggtcgcctcggtgctgagccgcgcctccgagcagatgcccaaggccgggcgc
gggccgatccggctgtgcctgacggcggcggggctgccgggcgaggtggagatggatctc
aagcaggagttcccggtgacgccggagatcaagggggcggtgaaatcgctcgacggagtg
ctggcggtggaggatttctga
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