Salipiger abyssi: Ga0080574_TMP4487
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Entry
Ga0080574_TMP4487 CDS
T04681
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
paby
Salipiger abyssi
Brite
KEGG Orthology (KO) [BR:
paby00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
paby03016
]
Ga0080574_TMP4487
Enzymes [BR:
paby01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Ga0080574_TMP4487
Transfer RNA biogenesis [BR:
paby03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Ga0080574_TMP4487
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
APZ54821
UniProt:
A0A1P8UZL2
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All DBs
Position
complement(3902162..3903319)
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AA seq
385 aa
AA seq
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MKTITTTQELAAFCEAAAEAPYVTVDTEFLRERTYYSKLCLVQLAAPGKGDENAVLVDPL
ADGLSLDPLLDLFRNTSVVKVFHAARQDLEIFFIDHGVIPDPLFDTQVAAMVCGFGEQVG
YETLVKRIARQSLDKSSRFTDWSRRPLTDAQKKYALADVTHLRVIYEHLAKELERTGRAR
WVAEELAVLTDPETYITRPEEAWQRVKTRSSSPRFLALVRELAAFREDYAQSKNIPRNRV
FKDDALTELASTKPVTMEDLGRSRLLLREARKGAIAEGILAAIQAGLDCPKDELPKPDTS
RDQLQVNPALADLLRVLLKARTEASGVAARLIAPAADLDAMAAGMRDVKALTGWRREVFG
EDALRLCEGQIGLAVKGREVEVIEI
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgaagaccatcaccacgacgcaagagcttgccgcgttctgcgaggctgcggcagaggcc
ccttatgtcacggtcgataccgaattcctcagggaacggacctattattccaaactctgt
ctcgtgcagctcgcggcgccgggcaagggtgacgagaacgcggttctggtcgatccgctg
gccgacgggctgtcgctcgatccgctgctcgatctcttccgcaacacgtcggtggtcaag
gtcttccatgccgcgcggcaggatctggagatcttcttcatcgaccacggggtgatcccc
gatccgctcttcgacacccaggtcgcggcgatggtctgcggctttggcgagcaggtgggc
tacgagacgctggtcaagcgtatcgcgcggcagtcgctcgacaagagctcgcgcttcacc
gactggtcgcgccgcccgctgaccgatgcgcagaagaaatacgcgctggccgatgtcacc
catctgcgggtgatctacgagcatctggcaaaggagctggagcgcaccggccgtgcccgc
tgggtggccgaggagctggcggttctgaccgatccggaaacctatatcacccggcccgaa
gaggcctggcagcgggtcaagacgcgctcgtcgagcccgcgctttctggcgctggtgcgc
gagctggcggccttccgcgaggattacgcgcagtccaagaacatcccgcgcaaccgggtc
ttcaaggacgacgcgctgaccgagctggcctcaaccaagccggtgacgatggaggatctg
ggccgctcgcggctgctgctgcgcgaggcgcgcaagggcgccatcgccgagggcatcctg
gcggcgatccaggccgggctcgactgccccaaggacgagctgccgaagcccgacacttcc
cgcgaccagttgcaggtgaacccggcgctggcggatctgctgcgggtgctgctgaaggcg
cgcaccgaggcctcgggcgtggcggcgcggctgatcgcaccggcggcggatctcgacgcc
atggcggcgggcatgcgcgacgtcaaggcgctgaccggctggcgccgcgaagtgttcgga
gaggacgcgctgcggctctgcgaggggcagatcggcctcgcggtcaagggccgcgaagtc
gaagtgatcgagatctga
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