Salipiger abyssi: Ga0080574_TMP864
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Entry
Ga0080574_TMP864 CDS
T04681
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
paby
Salipiger abyssi
Pathway
paby03410
Base excision repair
paby03430
Mismatch repair
paby03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
paby00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Ga0080574_TMP864
03430 Mismatch repair
Ga0080574_TMP864
03440 Homologous recombination
Ga0080574_TMP864
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paby03400
]
Ga0080574_TMP864
DNA repair and recombination proteins [BR:
paby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Ga0080574_TMP864
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Ga0080574_TMP864
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Ga0080574_TMP864
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
QRPTase_C
Flg_hook
Motif
Other DBs
NCBI-ProteinID:
APZ51198
UniProt:
A0A1P8UPC0
LinkDB
All DBs
Position
complement(192575..194314)
Genome browser
AA seq
579 aa
AA seq
DB search
MSYLGVEASLTGRRWVGPGVEQERQAEALAQQTALPRGLCQVLARLGVDVAEVPGYLEPK
LRDLLPDPRSLRDMEVAAARLLAAVSRRERVAVFADYDVDGGASAALLLDWLHQRGMAAT
LYIPDRIDEGYGPNEPAMAKLAETHDLIVCVDCGTLSHGPIAAAAGADVVVLDHHLAGET
LPDCVAVVNPNRQDEDGALAHLCAAGVVFLMLVECGRQLREAGERGPDLIAMLDLVALAT
VADVAPLKGVNRALVRQGLAVMARRARPGLVALADVARLDTAPSSYHLGYVLGPRVNAGG
RIGQADLGARLLACRDRHEAGALAERLDQLNTERREVEEAVRAAALAQAEERGLDAPLVW
AAGEGWHPGVVGIVASRLKELTNRPAVVIGLDGAEGKGSGRSVSGVDLGASVQRLAAEGL
LLKGGGHKMAAGLTVAREALESAMARLSELLAKQGAGQGGAADLKLDGVLMPGAATLDLC
EGMERAGPFGAGAPAPRFALPDVQIGFAKQVGAGHLKLSLGDGLGAKLEAICFGAFDGAL
GPELSGHQGRRFHVAGRLEINEWNGRRTVQLRLEDAAPA
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgagctatcttggagtcgaggcctcgctgaccgggcggcgctgggtcgggcccggggtg
gagcaggagcgtcaggccgaggcgctggcgcagcagacagccttgccgcgcgggctttgc
caggtgctggcgcggctcggtgtcgatgtggcggaggtgccgggctatctggagccgaag
ctgcgcgacctgctgcccgatccgcgcagcctgcgcgacatggaggtggcggcggcgcgg
ctgctggcggcggtaagccggcgcgagcgggtggcggtctttgccgattacgatgtcgat
ggcggcgcctcggcggcactgctgctcgactggctgcatcaacgcggcatggcggcgacg
ctttatatccccgaccggatcgacgagggctacgggccgaacgagccggcgatggcgaag
ctggccgaaacgcatgacctgatcgtctgcgtcgattgcggaacgctatcgcatggtccc
atcgccgcggcggcgggtgcggatgtggtggtgctggatcaccacctcgcgggcgagacg
ctgcccgattgcgtggcggtggtgaaccccaaccggcaggacgaggacggcgcgctggcg
catctctgcgcggcgggggtggtgttcctgatgctggtggaatgtggccggcagctgcgc
gaggcgggcgagcgcgggccggatctgatcgccatgctggatctggtggcgctggccacg
gtggccgacgtggcgccgctcaagggggtgaaccgggcgctggtgcgccaggggctcgcg
gttatggcgcggcgcgcgcggcccgggctggtggcgctggcggatgtggcgcggctcgat
accgcgccctcgtcctatcatctgggctatgtgctggggccgcgcgtcaatgccggcggg
cgcatcgggcaggcggatctgggcgcgcggctgctggcctgccgcgaccggcacgaggcc
ggcgcgctggcggagcggctcgaccagctcaacaccgagcgccgcgaggtcgaggaggcg
gtgcgcgccgccgcgctcgcgcaggccgaggagcgcgggctcgacgcgccgctggtctgg
gcggcgggcgagggctggcacccgggtgtggtgggcattgtcgcctcgcggctgaaagag
ctgaccaaccgtccggcggtggtgatcgggctcgacggcgccgaggggaagggctcgggc
cgctcggtctcgggcgtcgatctcggcgccagcgtgcagcggctggcggccgaggggctg
ttgctgaagggcggcgggcacaagatggccgccgggctcaccgtggcgcgcgaggcgctg
gaaagcgccatggcgcggctttccgagctgctggcgaagcagggcgctgggcagggcggc
gccgccgatctcaagctcgacggggtgctgatgccgggggcggcgacgctggatctctgc
gaggggatggagcgcgctggccccttcggcgcgggcgcgccggcgccgcggttcgcgctg
ccggatgtgcagatcggctttgccaaacaggtcggcgcggggcatctgaaactgtctctc
ggcgacggtctgggggcgaaactcgaggcgatctgctttggcgctttcgacggcgcgctg
gggccggaactgtcggggcatcaggggcgacgattccacgtggcggggcgtctggagatc
aacgaatggaacgggcgccgcacggtgcaactgcgtcttgaggacgcggcgccggcctga
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