Candidatus Odyssella acanthamoebae: ID47_02780
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Entry
ID47_02780 CDS
T03232
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
paca
Candidatus Odyssella acanthamoebae
Pathway
paca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ID47_02780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paca03019
]
ID47_02780
Messenger RNA biogenesis [BR:
paca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ID47_02780
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
RNase_J_C
Motif
Other DBs
NCBI-ProteinID:
AIK95889
UniProt:
A0A077AV12
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All DBs
Position
593982..595631
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AA seq
549 aa
AA seq
DB search
MTHIPGKNDFWFLPLGGSGEIGMNLNLYGHDGQWLMVDLGVTFGDRFGIDVITPDPEFIV
THREHLVGLVLTHAHEDHIGAIPYLWPLLRCPIYATKFTAEIVRQKIKELPWSKEVKIIE
VPLSGELKIGKFLVEYITLTHSIPEPNALAIATPLGTVMHTGDWKIDPAPLVGEATDTDR
LMDWGEQGILALVCDSTNVFTKGTAGSEETVRDELFKQIGAQKGRRIIVACFASNLARVE
TSILTAKSHGRKVCLVGRSLHKMVDAAQKVGYLKDIPPFIDEDTAMKLPPEEVMIISTGS
QGEPRAALSRIAADAHPFIKLDHRDVVFFSSRVIPGNERSINLLQNNLTRKGVGIITSHD
EDIHVSGHPARDELMQMYEWIKPKVLIPVHGELRHMTEHAKLGLSCGIPKAVVPENGSLI
RLDEHNPTIMDYVTAGRLGYDGSRMVPMVSTMLSERGKLASNGAIFVSLVLDREGGLECE
PTLTLLGLTVGGEEQERMERDILRCIKSCIHNGYQNLETLQEEIRINIRRATNSWIGKKA
PTEIHIIQV
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgactcatatacctggaaaaaatgatttttggtttttaccacttgggggctccggtgaa
atcgggatgaacctaaacctgtacggccatgatggtcaatggctgatggtggatttgggg
gttacctttggagatcgctttggtattgacgtcattacccctgatcccgaatttatcgta
acccatcgcgaacatttagttggacttgttctaacccatgcccatgaagaccatattggg
gcgattccttatttatggccgttattaagatgccctatttatgcaacaaaatttacggct
gaaattgtccgtcagaaaattaaagaactcccctggagcaaagaagttaaaatcattgaa
gtacccttatcaggggaattaaagattggaaaattcttagtcgaatatattacgcttacc
cattcaattcccgagccaaatgccttagccattgccacaccactgggaactgtgatgcat
acaggggattggaaaattgatcccgcccccctcgtcggcgaagcgacagatacagaccgt
ctaatggattggggagagcaggggattttagccctcgtttgtgattccaccaatgtcttt
acaaaaggaaccgcaggatcagaagaaactgtgcgtgatgaattattcaaacaaatcggc
gctcaaaaaggccggcgcatcattgtagcttgctttgcctcaaatctagcgcgcgtcgag
acatccattctgacggccaaaagccatggtcgtaaggtttgcttggttggtcgatcgttg
cataaaatggttgatgccgctcagaaagttggttacctaaaagatatcccaccatttatt
gatgaagatacagcaatgaagttgccgcccgaagaggtaatgattatcagtacaggatcc
caaggagaaccgcgggctgctctatcacgaatagctgctgatgctcatccctttattaaa
ttagaccatcgggatgttgtcttcttttcatcccgcgttattcccggtaatgaacggtca
ataaacttgctacaaaataatctcacccgcaaaggtgttggtattattacgtctcatgat
gaagatattcacgtctcaggccacccagccagggatgagcttatgcaaatgtacgaatgg
atcaaacctaaagttttaatcccggtccatggtgaattgcgtcacatgaccgagcacgca
aaactaggtctttcttgcgggataccgaaggctgttgtaccggaaaatggctcgctcatt
cgactggatgaacataatccaactatcatggattacgtgactgcggggcgtctaggatat
gatggttcgcgcatggtccctatggtcagtaccatgttgagcgaacgcgggaaattagct
tcgaatggtgctatttttgtcagtcttgttcttgatagagaaggggggttagaatgtgag
ccaaccctcactctgttggggttaaccgtgggtggagaagaacaagaacgtatggaacga
gatatcctgcgctgtattaaatcttgcattcataacggttatcaaaatctagaaacgcta
caagaggaaattcgaattaatattcgtcgtgctaccaatagttggattggtaaaaaagcc
ccgacagaaattcatattattcaagtataa
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