Candidatus Odyssella acanthamoebae: ID47_10855
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Entry
ID47_10855 CDS
T03232
Name
(GenBank) single-stranded DNA exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
paca
Candidatus Odyssella acanthamoebae
Pathway
paca03410
Base excision repair
paca03430
Mismatch repair
paca03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
paca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ID47_10855
03430 Mismatch repair
ID47_10855
03440 Homologous recombination
ID47_10855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paca03400
]
ID47_10855
DNA repair and recombination proteins [BR:
paca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
ID47_10855
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
ID47_10855
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ID47_10855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AIK97116
UniProt:
A0A077AX19
LinkDB
All DBs
Position
complement(2213590..2215371)
Genome browser
AA seq
593 aa
AA seq
DB search
MTLLHKKPQSSAYLFDGKASVGGRRWVFEDDNARDALQLAQNHGIGTLAASILLKRGVTF
QTAGSFLQPTLRDLMPDPSHLKDMDEGVDRVVKAIQAGETIAVFGDYDVDGATATALLRR
YFRDIGVTLRVYIPQRIEEGYGPTIPAMQQLAKEGTTTLLMVDCGTTSFAPLEEAAQLGM
DVIILDHHMSQASLPIATALINPNRIDENSPLTNLCAAGLGFVFLVALQRRLRQEGWFTS
RSEPDLRQYLDLVALGTVCDVMTLTGLNRAFVAQGLKVMARRANVGLRYLADIAALDDSP
SAYHLGFLLGPRINAGGRVGRAEYGSRLLSTTDELEAQQLARELDLYNKERQAIETLVLE
EAMTQVESRGLARHPLILVGQEGWHPGVIGIVAGRLKERYNRPVCVVGFDAETGKGSGRS
INGVNLGAAMHAACHHGFLVAGGGHAMAAGFTVMRDKFEGFYEFLRDTLKHQIDGVDPIL
ELDGILTPSGATLELVREIKMLEPFGNGNPTPKFCIHKAKVTYAEQVGVNHIRCSLEGED
GTRLKAMAFRALGTPLGNAIMARNNKAIEIAGTLKVDSWNGRHSVTCFIEDIM
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgacattactgcataaaaaaccacaatcctcagcctacttatttgatggaaaagcatct
gtcgggggacgtcgttgggttttcgaagacgataatgccagagacgctcttcagcttgcc
caaaaccatgggattggaactttagccgcttcgatacttttaaaaagaggcgttaccttc
caaacagcggggtcgttcttacaacctacgttacgtgatttgatgcctgatccctcccac
ttaaaagatatggacgaaggcgtggatcgagtagtcaaagcaattcaggcgggtgaaact
attgcggtgttcggcgattatgatgtggatggcgccacggcaacggccctcttacgtcgt
tatttccgtgacattggcgttacacttcgagtttatattccgcagcgcatcgaagaagga
tacgggccgaccattccggcgatgcaacagcttgccaaagaagggaccaccactctgctg
atggttgactgcggtactacttcttttgctcccttggaagaagcagctcaattagggatg
gatgtgattattctagatcaccatatgtcgcaggcttctttacccattgcaacagcttta
attaatcccaatcgcattgatgaaaacagccctcttaccaacttatgtgcagctggatta
ggctttgtctttttggtagccttacagcggcgcttacgccaagagggatggtttaccagt
cgctcagagcccgatttacgtcaatacttagatctggtcgcgttggggactgtttgtgac
gtcatgacattgaccggccttaaccgggcgttcgttgcacagggcctgaaggttatggct
cgacgggccaacgttggactgcggtatctggcagacattgctgctttggacgattcgcca
tcagcctaccatctgggatttctcctggggccgcgtattaatgcgggggggcgcgtgggg
cgagccgagtatggatcacggctgctttcaacaaccgatgagctagaagcccaacaattg
gcgcgagaattagatctctataataaagagcgccaagccatcgagaccctggttttagaa
gaagctatgacccaagtagaaagccgaggtttagcgcgccatcccttgattttagtcggc
caagaaggttggcatcctggtgtcatcggtattgtcgctggccgcctgaaagaacgttat
aatcgccctgtttgtgtggttggctttgatgcagaaacaggtaagggatcaggacgctca
atcaatggtgttaatttaggggcagcaatgcatgccgcctgtcaccatggatttttagtc
gccggcggcggtcatgccatggcggcggggtttacggtgatgcgggataaatttgaaggt
ttttatgaattccttcgagacactcttaaacaccagatcgatggtgttgatccaattctg
gagctcgatggaattttaacaccatcgggggcgacacttgagcttgtcagagaaattaaa
atgctagaaccttttgggaatggcaatccaacaccaaaattctgtattcataaagctaaa
gtgacctatgccgagcaagtcggggtcaaccatatccgatgtagtctcgagggtgaagac
ggaacacgccttaaagcaatggcattccgggctcttggaacgcccttaggcaatgccatc
atggcccgtaacaataaggccatcgaaatagcgggaacgctgaaagtcgactcctggaac
ggacgtcatagtgtgacgtgttttattgaagatataatgtaa
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