Pectobacterium actinidiae: M9782_00790
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Entry
M9782_00790 CDS
T08879
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pacb
Pectobacterium actinidiae
Pathway
pacb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pacb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M9782_00790 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pacb03019
]
M9782_00790 (rhlB)
Enzymes [BR:
pacb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M9782_00790 (rhlB)
Messenger RNA biogenesis [BR:
pacb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M9782_00790 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CCDC138_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WEF11881
LinkDB
All DBs
Position
183206..184495
Genome browser
AA seq
429 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPQVIEALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKT
LAFLASTFHYLLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHATGLKLGLAYG
GDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPAAAQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLLEEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILE
EFTQGNLDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSISLA
CEEYALNLPAIETYIGHGIPVSKYNSDALMSDLPAPKRLTRPPRSNNGPRRHNAPRRSGA
PRNNRKRAD
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttaactgaacagaagttttccgacttcgccctgcacccgcaggtt
attgaagctcttgaaagtaaagggtttcataactgtacgcctattcaggcgttagctctg
ccattagctttgtcagggcgtgatgtggcgggtcaggcgcaaaccggtaccggcaagacg
ctggcttttctcgcgtctactttccattatctgctttcacaccctgcaaacgcagagcgt
cagaccaatcaaccgcgtgctttaattatggcaccaacccgtgaactggctgtccagatt
cactctgatgcagaagcgctgtctcatgcaactgggctaaaattaggtttagcctacggt
ggcgacggctacgacaaacagctaaaagtgctggaaagcggcgttgatattctgatcggc
accaccggtcgcctgatcgattacgctaagcagaaccacatcaatctgggcgcgattcag
gtcgtcgtgctggacgaagccgatcgtatgtacgatctcggctttatcaaagacattcgc
tggctattccgccgcatgcccgcagcggcgcaacggctgaacatgctcttttccgctacg
ctctcctaccgagtgcgtgaactcgcgtttgaacagatgaataacgccgagtacgtggaa
gttgaaccggaacaaaaaaccggccaccgcattaaagaagaactgttttatccgtccaat
gaagaaaaaatgcgcctgctccagacgctgctggaagaagagtggccggatcgctgcatt
attttcgcgaataccaaacaccgctgcgaagacatctggggtcatctggctgccgatggt
catcgcgttgggctgctgacgggcgacgtcgcacagaaaaaacgcctgcgtattctggaa
gaatttacccaaggtaatctggatattctggtggcaacggacgttgcagcacgcggtttg
catataccttctgttacccacgttttcaactacgatctgccggatgactgcgaagactac
gttcaccgtattggccgtacgggccgtgcaggacaaagcggattctctatcagcctggcc
tgtgaagagtacgcgctgaaccttcccgctatcgaaacctatatcggtcacggtatccct
gtcagcaaatacaacagtgacgcgctgatgagtgatttacccgcgccgaagcgtttaacg
cgtccaccgcgttccaataatggcccgcgccgacacaatgcgccgcgccgcagcggagcg
ccccgaaataaccgtaaacgagcggactaa
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