Pectobacterium actinidiae: M9782_03370
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Entry
M9782_03370 CDS
T08879
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pacb
Pectobacterium actinidiae
Pathway
pacb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pacb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M9782_03370 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pacb03021
]
M9782_03370 (rpoC)
03400 DNA repair and recombination proteins [BR:
pacb03400
]
M9782_03370 (rpoC)
Enzymes [BR:
pacb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M9782_03370 (rpoC)
Transcription machinery [BR:
pacb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M9782_03370 (rpoC)
DNA repair and recombination proteins [BR:
pacb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M9782_03370 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WEF12348
LinkDB
All DBs
Position
755298..759521
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELTETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERVYRAG
LASLHARVKVRITEEIKSIEGDVTHQTSIIDTTIGRAILWMIVPKGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKAEIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGVVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVIKPGTADILVPRNTLLNEQWCDMLEENSVDAVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
NNAKFVMNSNGKLVITSRNTELKLIDEFGRTKESYKVPYGAAMAKGDGAEVNGGETVANW
DPHTMPVITEVSGNIRFTDMIDGQTITRQTDELTGLSSIVVLDSAERTGSGKDLRPALKI
VDDKGEDVLIPGTDMPAQYFLPGKAIVQLEDGVKISSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVSAGSTEFLEGEQAEVSRIKIANRQLEADGKITATYSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRQAGEAPV
VPQVSADEASANLAELLNAGFGSSDDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcctcgccagacatgatccgttcgtggtcttttggtgaagttaaaaag
ccagaaaccatcaactaccgtacgttcaaacctgaacgtgacggccttttctgcgcccgt
atctttgggccggtaaaagattatgagtgcttgtgcggtaagtataagcgcctgaaacac
cgcggtgttatttgtgagaagtgcggcgttgaagtgacccagactaaagtgcgccgtgag
cgtatgggtcacattgagctggcttctccgactgcgcacatctggttcctgaagtcactg
ccttcccgtatcggtttgctgctggatatgccgctgcgtgatattgagcgtgtgctttat
ttcgaatcttatgtcgtggttgaaggtggcatgaccaaccttgagcgccgtcagatcctg
actgaagagcagtatctggatgcgctggaagagtttggtgatgaattcgacgcgaaaatg
ggcgccgaagcgatccaggctctgctgaagaatatggatctggagcaggaatgcgagcag
ctgcgtgaagagctgaccgaaaccaactccgaaactaaacgtaagaagctgactaagcgc
attaagctgctggaagcgttcgtacagtctggtaacaaaccagagtggatgatcctgacc
gttctgccagtactgccgccagatctgcgtccgttggttccgctggatggtggtcgtttt
gcgacttccgacctgaacgatctgtatcgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgtctgctggatctggctgcgccagatatcatcgtacgtaacgaaaaacgtatgttgcag
gaagcggttgatgccttgctggataacggccgtcgtggtcgtgcgatcaccggttctaac
aaacgtcctctgaaatctttggccgatatgatcaaaggtaagcagggtcgtttccgtcag
aacctgcttggtaagcgtgttgactactccggtcgttccgttatcaccgttggtccatac
ctgcgtctgcaccagtgtggtctgccgaagaaaatggcactggagctgttcaaaccgttc
atctacggcaagctggaactgcgtggtcttgccaccaccatcaaagctgccaagaaaatg
gttgagcgtgaagaagccgtcgtatgggatatcctggacgaagtcatccgcgaacacccg
gtactgttgaaccgtgcaccaacactgcaccgtttgggtattcaggcatttgaaccggta
ctgatcgaaggtaaagcaattcagttgcacccgctggtttgtgcggcatataacgccgac
ttcgacggtgaccagatggctgtacacgtaccgttgacgctggaagcccagctggaagcg
cgtgcgttaatgatgtcgaccaacaacatcctgtcccctgcgaatggtgagccaatcatc
gttccttctcaggacgtggtattgggtctgtattacatgacgcgtgactgtgttaacgcc
aaaggcgaaggcatggtactcacgggtccgaaagaagctgagcgcgtttatcgtgctggt
ctggcctctctgcatgcgcgcgttaaagtgcgtatcacggaagagatcaagagcatcgaa
ggcgatgtgacgcatcagacatcgattattgatacgactatcggtcgcgccatcctgtgg
atgatcgtaccgaaaggtctgccgtactcgatcgttaaccagcctctgggcaagaaagcg
atctccaaaatgctgaacacctgttaccgcattttgggtctgaaaccgacggttatcttc
gctgaccagacgatgtacaccggttttgcttacgcggcgcgctctggtgcttccgtaggt
atcgatgacatggttatcccggagaaaaaagccgagattatcgaagaagcagaaaccgaa
gttgccgagattcaggagcagttccagtctggtctggttaccgcgggcgaacgctataac
aaagtgatcgatatttgggctgcggcgaacgaacgtgttgcgaaagcgatgatggaaaac
ctgtccgttgaggatgtggttaaccgtgatggcgtggtcgagcagcaggtttctttcaac
agcatctttatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagttg
gcgggtatgcgtggtctgatggcgaaaccagatggttcgatcatagagacgccgattacc
gcaaacttccgtgaaggtctgaacgtactccagtacttcatctcgacgcacggtgcgcgt
aaaggtttggcggataccgcactgaaaacagcgaactccggttatctgacgcgtcgtctg
gttgacgttgcgcaggatctggttgtgaccgaagacgattgtggtacccatgaaggtatc
atgatgacgccggttatcgagggtggtgatgttaaagagccactgcgtgagcgcgtactg
ggtcgtgtaacggctgaagacgtgatcaaaccgggcacggcggatattctggttccacgt
aacacgctgctgaatgagcagtggtgtgacatgttggaagagaactccgttgacgccgtt
aaagtacgttcagttgtaagctgcgaaaccgactttggcgtctgcgccaattgctacggt
cgcgatctggctcgtggtcatatcatcaacaaaggtgaggccatcggggttatcgcggca
cagtccatcggtgaaccgggtacacagttaaccatgcgtacgttccacatcggtggtgcg
gcatcgcgtgcggcggctgagtccagcattcaggtgaaaaacaaaggtagcctgaaactg
aacaacgcgaagttcgttatgaacagcaacggtaaattggttattacttcacgtaatacc
gaactgaagttgatcgacgaattcggacgtacgaaagaaagctataaagtgccttacggt
gcggcaatggcgaaaggtgatggcgcagaagttaacggtggcgaaaccgtggctaactgg
gatccgcacaccatgcctgttatcaccgaagtgagcggtaacattcgtttcactgacatg
attgatggccagacgattactcgtcagaccgacgaactgaccggtttgtcctctatcgtg
gttctggatagtgcagagcgtactggtagcggtaaagacctgcgtccggcactgaaaatc
gttgatgacaaaggcgaagatgtactgattccaggtacggatatgcctgctcagtacttc
ctgccgggtaaagcgatcgtgcagttggaagacggtgtgaaaatcagcagcggtgatact
ttggcgcgtattcctcaggaatccggcggtaccaaggatattaccggtggtctgccacgc
gtagccgacctgttcgaagctcgtcgtccgaaagagccggctattctggcagagatcagc
ggtatcatttccttcggtaaagaaactaaaggtaaacgccgtctggtaatttctccgttg
gatggcagcgatgcttacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgaagtggtggaacgtggtgacgttgtttccgacggcccagagtctccgcacgatatc
ctgcgtctgcgtggtgtacatgcagtaacgcgttatatcaccaacgaagttcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ttgcgtaaaggcaccatcgttagcgcgggtagcacggaattcctggaaggcgaacaggca
gaagtgtctcgcatcaagattgctaaccgtcagttggaagctgatggcaagatcacggca
acgtacagccgcgatctgctgggtatcaccaaagcatctctggcgaccgagtccttcatt
tctgcggcatcgttccaggaaaccactcgcgtacttactgaagccgctgttgctggtaaa
cgtgatgaactgcgtggcctgaaagagaacgttatcgtaggtcgtctgatccctgcgggt
acgggttatgcgtaccaccaggatcgtatgcgccgccgtcaggcgggtgaagcgcctgtc
gtgcctcaagtgagtgccgatgaagcttctgctaacctggctgaactgttgaacgcaggc
tttggtagcagcgacgacgaataa
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integrated database retrieval system
