Pectobacterium actinidiae: M9782_03600
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Entry
M9782_03600 CDS
T08879
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
pacb
Pectobacterium actinidiae
Brite
KEGG Orthology (KO) [BR:
pacb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pacb03019
]
M9782_03600 (csrD)
Messenger RNA biogenesis [BR:
pacb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
M9782_03600 (csrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
Sigma_reg_N
Motif
Other DBs
NCBI-ProteinID:
WEF12388
LinkDB
All DBs
Position
804991..806928
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AA seq
645 aa
AA seq
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MGFTTRFSILIVLLTVIAIFLMLFSSIFSLYYYSQLRTEQQLREVTASIDQALLVQSPEN
IQYWLPGMMKTAGIVALDIQDNDSTLYSIQLPEAGWERTHLYHEVEFPLMHHTNMAIALK
YVDPLMGLPRFVVSTLSVLLAVGLMLLMLYFSLHWLRRQAAGQEELEKRAQRILKGERES
VMQGSVREWPVKTSGALDQLLSDLVEAREERGRVDTLIRAFAAQDAETGLSNRLFFDNQL
TTQLEDGEEVGTHGVVMMIRVPDFETLQETHGYTSALQEYRFTLVNLLSTFVMRYPSALL
ARYFSSDFTVLLPHSTLKEANAIATQLVKAIDILPACPLIDREEVLHIGICAYRGGQSAE
QVMESVEDATRNAVLQGGNSWCVFDRQVPDKGRGSVKWRTLLEQTLARGGPRLYQKPAVT
KEGVVHHREMMSRIYDGEQELLAAEYMPLVQQLGLAASYDRQLVARIIDLSASWPGETLA
LPVSVDSLLQKPFLRWLKEILLQCPKTQRQCILFELAEADVCQYIGRLRPVLNLILGLGC
RLAVTQAGLTLVSTTYIKSLPVEIIKLHPGLVRSLERRPENQLFVQSLTEACKGTQTRVF
AAGVRTKEEWRMLLGKGVYGGQGDFFAASVPVTDELKKYSPRHRV
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgggatttacgaccagattctcgatactcatcgtattgctgacggttatcgccattttt
cttatgcttttcagtagcatattcagcctctattattatagccagttgcgaaccgagcag
cagctacgtgaggtcaccgccagtatcgatcaggcgttattagtgcaatcgcccgaaaat
attcaatattggctgccaggaatgatgaaaacggcaggcattgtggcgttggatattcag
gataacgattcgaccctctattcaatacagctgcccgaggccggctgggaacgcacgcac
ctctatcatgaggtcgaatttccgctgatgcaccatacgaatatggcgatcgccttaaaa
tatgtcgatccgctgatggggttaccacgtttcgtggtgtcgacgttatcggtattgctg
gccgtgggcctgatgctcctgatgctgtacttctcccttcactggctgcgccgtcaggct
gccggacaggaagagttggaaaaacgcgcacagcgtattctcaagggcgagcgtgaatca
gtgatgcaggggtcggtacgtgagtggccagttaagaccagtggggcgctcgatcaactg
ttgtctgatttagtggaagcgcgtgaggaacgcggacgggttgatactttaatccgcgct
ttcgccgcgcaggatgccgaaaccgggctgagcaatcgtctgttttttgacaatcagctg
acgacacagttggaagatggcgaagaggtggggacgcacggcgtcgtcatgatgattcgc
gtacctgattttgaaaccttgcaggaaacgcacggctataccagtgcgcttcaggaatac
cgtttcacgctggtcaacctgctgtcgacgtttgtcatgcgctatccctccgcgctgctg
gcgcgttatttcagcagcgatttcacggtattactcccccacagcacgcttaaggaagcc
aatgcgattgccacgcagctcgtgaaggccatcgatattctccctgcctgtccgttgatc
gatcgggaagaggtgctccacattggcatctgtgcctatcgcggcgggcaaagtgcagag
caggtgatggagagtgtggaagatgcgacgcgcaatgcggtgttgcagggcggtaatagc
tggtgcgtgtttgacaggcaggtgccagacaaagggcgcggcagcgtgaaatggcggacc
ctgctggaacagacgctggcgcgcggtggtccgcggctgtatcagaaacctgcggtcacc
aaagagggtgtagtacatcatcgtgaaatgatgagccggatttacgacggagaacaggaa
ctgctcgcggcggagtatatgccgctggttcagcagttggggctggcggccagctatgat
cggcagcttgtggcgcgaattattgatttgtcagcgagctggcctggagaaacactggct
ttaccggtaagtgtggactcacttttgcagaaacctttcctgcgctggctgaaagaaatt
ttactgcaatgtccgaaaacgcagcgacagtgcattttatttgaacttgcagaggcagat
gtctgtcaatatatcggccgcctgcgcccggttctcaatttgattctgggattaggctgt
cgcctggcggtcacgcaggcgggtttgacgctggtcagtacgacgtatatcaagtcactt
cccgtggagatcatcaagcttcatcccggtttggtccgcagtcttgagcgccgcccggaa
aatcagctgtttgtacaaagcctgaccgaggcctgtaaaggcacgcaaacgcgggtgttt
gccgctggcgtgcgaaccaaagaggagtggcggatgctgttgggcaagggcgtttatggt
gggcaaggtgatttttttgccgcatcagtccctgtaacggatgagctgaaaaaatattca
ccacggcatcgtgtttaa
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