Pectobacterium actinidiae: M9782_05550
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Entry
M9782_05550 CDS
T08879
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pacb
Pectobacterium actinidiae
Pathway
pacb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pacb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M9782_05550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pacb03019
]
M9782_05550
03009 Ribosome biogenesis [BR:
pacb03009
]
M9782_05550
Enzymes [BR:
pacb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M9782_05550
Messenger RNA biogenesis [BR:
pacb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M9782_05550
Ribosome biogenesis [BR:
pacb03009
]
Prokaryotic type
rRNA helicases
M9782_05550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_C
CMS1
Cas3-like_C_2
AAA_22
DRTGG
Motif
Other DBs
NCBI-ProteinID:
WEF12752
LinkDB
All DBs
Position
1248931..1250823
Genome browser
AA seq
630 aa
AA seq
DB search
MTDLVTSFADLGLNTSILNALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLNNLKPELKAPQILVLAPTRELAVQVAEACNDFSKHMHGVNVVALYGGQRYDVQLR
ALRGGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAE
HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTVQGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNV
ERTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLDMYRALLTKLQPQEELDVET
LAAALLKMAQGERPLILPPDPVFRPRREFRDRDESRSDSRGDRRRDPRDSRDSRDGDRPQ
RRERRDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKG
MPGDLLSHFTRTRILNKPMNMQLMGDAVAQPERRGGGRPGGERRDGAAPRRSFGGGERRE
GNGGERRERSFNRDNRDGASRAPRRRPADA
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgactgatttagtaacttcttttgccgatttggggctgaacacctctattcttaatgcc
ctgactgatttgggctatgaaaaaccgtctccgattcaggcggaatgtattcctcacctg
ctgaatggtcgcgatgtgctgggtatggcacagaccggtagcggtaaaacagcagcgttc
tctctgccattactgaataatctgaaacctgagcttaaagcaccacagattctggtgctg
gcaccgacccgcgaactggcggtgcaggtagcagaggcctgcaatgatttctccaaacat
atgcacggcgtgaatgtcgtcgcactgtacggcggtcagcgctatgacgtgcaactgcgc
gctttgcgtggcggagcacagattgttgtcggtacgccgggccgtctgctggatcacctg
aaacgcggtacgctggatctgtccaacctgagtggtctggtgctggacgaagcggatgaa
atgctgcgtatgggcttcatcgaagatgttgaaaacatcatggctcagatccctgcggaa
catcagactgcactgttctctgcgactatgccagaagcgattcgccgcattacgcgccgt
ttcatgaaagatccgcaagaagttcgcattcaatcaagcattactacgcgcccagacatc
agccagagctactggacggtgcaggggatgcgtaaaaatgaagcgctggtacgtttcctg
gaagcggaagattttgatgcggcgattattttcgttcgtaccaagaatgcaacgctggaa
gtggccgaagcgctggagcgcagcggttacaacagtgccgcgctgaacggtgacatgaat
caggcgctgcgtgagcaaacgctggagcgtctgaaagatggtcgccttgatatcctgatc
gcgaccgatgttgcggcgcgtggtctggatgttgagcgtatcagcctggtagtcaactac
gatatcccgatggatgccgagtcttacgttcaccgtattggccgtactggtcgtgcaggt
cgtgcgggtcgcgctctgctgttcgtcgaaaaccgtgaacgtcgcctgctgcgcaacgtt
gagcgcacaatgaagctgaccattccagaagtggaattgccaaatgcagaattgctgggt
caacgtcgtctggctaagtttgccgctaaagtacagcaacagctggaaagcagcgatctg
gatatgtaccgtgcgctgttgacgaaattgcagccacaggaagagctggatgttgaaacg
ctggctgctgcgctgctgaaaatggcgcagggcgaacgtcctctgattctgccacccgat
ccggtcttccgtcctcgtcgcgaattccgcgatcgtgatgagtctcgcagtgattcacgc
ggcgatcgtcgtcgtgatcctcgcgattctcgtgacagccgtgacggtgaccgtccgcaa
cgtcgtgagcgtcgtgatgctggtgagatggaactgtatcgtattgaagtgggtcgtgat
gacggcgttgaagttcgccacattgttggtgccatcgccaacgaaggggatatcagcagc
cgctatatcggtaacattaagctgtttgcgtctcactcgacgattgaactgccgaaaggt
atgccgggcgatctgttatcacatttcacccgtacgcgtattctgaacaaaccaatgaat
atgcagttgatgggtgatgcagttgcacagccagaacgtcgtggcggtggtcgtcctggt
ggcgaacgtcgtgatggcgctgcaccacgtcgttctttcggcggtggtgaacgccgtgaa
ggtaacggcggtgagcgtcgtgagcgttctttcaaccgtgataaccgtgacggcgcttca
cgcgctccacgtcgccgtcctgctgacgcgtaa
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