Pectobacterium actinidiae: M9782_05835
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Entry
M9782_05835 CDS
T08879
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pacb
Pectobacterium actinidiae
Pathway
pacb03410
Base excision repair
pacb03430
Mismatch repair
pacb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pacb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
M9782_05835 (recJ)
03430 Mismatch repair
M9782_05835 (recJ)
03440 Homologous recombination
M9782_05835 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pacb03400
]
M9782_05835 (recJ)
DNA repair and recombination proteins [BR:
pacb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
M9782_05835 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
M9782_05835 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M9782_05835 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
WEF12804
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All DBs
Position
1308139..1309902
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AA seq
587 aa
AA seq
DB search
MDMITQLRRRPLAEDIDLPDSVPPLLRRLYAQRGVKAAQELEHRLGGLLDYRLLSGIDKA
IDLLQHTLAERRCIVIVGDFDADGATSTALTVLALRSMGGVNVKYLVPNRFENGYGLSPE
VVAQAAALGAEVIVTVDNGISSHAGVEDAHRRGIAVLVTDHHLPGEILPAADAMINPNLP
DCLFPSKALAGVGVAFYLMMALFVRLRDSDWFSQPLFTQQGLAKPNLTELLDLVALGTVA
DVVPLDANNRILVAQGLNRIRAGECRPGIRALLEVANRDASQLVSSDLGFALGPRLNAAG
RLHDMKIGVELLLSDDIVQARLLANELNDMNQDRREIEQGMQAEALRLCESLERTRTELP
YGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGMLKGSGRSISGLHLRDALERL
DTLYPGMMDKFGGHAMAAGLSLHEDRFDDFRQRFGELVGEWLDPSQLEGVVWSDGELALP
ELDLLSTAETLRYAGPWGQAFPEPTFDGCFRILQPRLLKERHLKAMFEPIGATGAVPLLD
GIAFNVDTTLWPDPSIKEVEMVYRLDINEFRGKRSVQLMIQHLWPRA
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
gtggatatgattacccaactccgtcggcgcccgctggcggaggacattgatttacctgac
tccgttccgcctttgctgcgccgcctttatgcgcagcgcggcgttaaagcagctcaggag
ctggaacatcgcctaggtggtttactcgattaccgtttgctcagcggcattgataaagcg
attgatctgttgcaacacacgctggcagagaggcgctgtatcgtcatcgttggtgacttt
gatgccgatggtgccaccagcaccgcgctcaccgtattagcgttgcgcagtatgggcggc
gtgaacgtgaaatatctggtgccgaatcgttttgaaaacggctacgggctaagcccggaa
gtggtggcacaggctgccgcgctgggtgcggaagtgattgttaccgttgataacgggatc
tcttctcacgcgggagtagaagatgcgcatcggcgcggtatcgcggtgctggtgaccgat
caccacctgccgggtgaaatcttgccggctgccgacgccatgattaaccccaatttgcct
gactgtctgtttccctccaaggcgctggcgggggtgggcgtcgcgttttacctgatgatg
gcgctgttcgtgcgcctgcgtgatagcgattggttttcgcaacccttgtttacgcaacag
gggctagcgaagccgaacctcaccgaattactggatctggtcgcgctgggcactgtggct
gacgtggtgccgctggatgccaataaccgaattctggttgcacaggggctgaaccgcatt
cgtgcgggcgagtgtcgtccgggcattcgtgcgctgctggaagtagctaaccgcgatgcc
agccaattggtctccagtgatttaggctttgcgcttgggccacgattgaacgccgccggt
cgattacacgacatgaaaatcggtgttgagctgctgctcagcgatgacatcgtacaagca
cgcctccttgccaacgaactgaatgacatgaatcaggacaggcgggagatcgaacaggga
atgcaggcagaagcgctgcgcctgtgtgagtcgttggagcgtactcgtactgagctgccc
tacgggctggcgatgtatcacccagagtggcaccagggcgtcgttggtattctggcttcg
cgcattaaagaacgctttcatcgtccggtaattgcctttgcacctgcgggcgacggcatg
ctgaaaggctcagggcgctccatttccggtctgcacctgcgtgatgcgctggagcggctg
gatacgctgtaccccggtatgatggacaaattcggcggacacgcgatggcggcagggcta
tcgctacatgaagatcggttcgacgatttccgtcagcgcttcggcgaactggttggcgaa
tggctcgatccgtcgcagcttgaaggcgttgtctggtctgatggtgaactggctctgccg
gagctggatttgttatcgacggcagaaacgctgcgctacgcggggccgtggggtcaggca
tttcccgagccaacgtttgatggctgcttccgtattctgcaaccgcgtctgctgaaagaa
cgtcatttgaaagcgatgtttgagccgataggcgcaacaggcgctgtgccgctgttagat
ggcattgcgttcaatgtcgataccaccctctggccggatccgagcattaaagaagtcgaa
atggtgtaccggctggatattaacgagtttcgcggtaaacgctcggtgcaattgatgatc
caacatctgtggccgcgcgcgtga
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