Pectobacterium actinidiae: M9782_12210
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Entry
M9782_12210 CDS
T08879
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pacb
Pectobacterium actinidiae
Brite
KEGG Orthology (KO) [BR:
pacb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pacb03016
]
M9782_12210 (rnd)
Enzymes [BR:
pacb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
M9782_12210 (rnd)
Transfer RNA biogenesis [BR:
pacb03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
M9782_12210 (rnd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
WEF09990
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All DBs
Position
2832450..2833574
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AA seq
374 aa
AA seq
DB search
MNYQLITSDIGLQQVCSQARRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLTI
TDWAPFQALLRDEQVTKFLHAGSEDLEVFLNAFGTLPTPFIDTQILAAFLGKPLSYGFAA
LVADYMGVTLDKSESRTDWLARPLSEKQCDYAAADVFYLLPMAIQLVADTEAAGWTNAAL
DECLLLCQRKQDILAPALAYREFGNAWQLRGRNLACLQRLAEWRLRKARERDSAVNFVVR
EENLLQVARCLPTSLGELSSLGLSGPEIRYHGKTLLDCVAQTDGIADSDCPPPLINLIDY
PGYKKAFKDIKALVQRVSEQSGLSAELLASRRQINRLLNWHWKLSGQDVGTPEMLSGWRG
QLYGDELREIVQGY
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
ttgaattatcagttgatcacttccgacatcgggttacaacaggtttgctctcaggcgcga
cgctttccgcaggtggcattggacacggagttcgttagaacccgcacgtattacccgcaa
ttagggttgattcaattgtatgacggcgaacagctttcacttattgacccgttaacgatt
accgactgggcaccctttcaggcgttactgcgtgatgagcaagtcactaaattcctgcat
gcgggcagcgaagatttggaagtgtttctcaatgcgtttggaacactgccgacgcctttc
atcgatacacagattctggccgcatttttaggtaagccgctttcctatgggttcgctgcg
ctggtggccgactacatgggcgtgacgctggataaaagcgagtcgagaacagactggctg
gctcgtccgctgagcgaaaagcagtgtgattatgctgccgccgatgtgttctatctgttg
ccgatggccattcaactggtggcagatacggaagccgcaggctggacgaatgccgcgctg
gatgagtgtctcctgctgtgtcagcgtaaacaggatattctggcaccggcgctggcctat
cgcgaatttggtaatgcctggcagctgcgtggccgaaacctggcttgccttcagcgcctg
gccgagtggcgtttgcgtaaagcgcgtgagcgagacagcgcggtgaattttgtcgtacgt
gaagagaatctcttgcaggtggcgcgttgtttgcccacttcgctgggtgagctgagctca
ctggggctgagcggcccggaaatccgctaccacggcaaaacgctgctggattgtgtcgca
cagacggacggcattgctgactcggattgcccacctccgctgattaatttaatcgattat
cctggctataaaaaagcgtttaaagatatcaaagcgctggtgcagcgcgtgagcgaacag
agtggattatccgccgaactattggcttcacgtcgtcaaattaatcgtttgttgaactgg
cactggaaattaagcggacaagatgtggggacgccggaaatgctgtctggctggcgcggt
cagttatatggcgatgaactgcgtgaaattgtgcagggttattaa
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