Pectobacterium actinidiae: M9782_13735
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Entry
M9782_13735 CDS
T08879
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pacb
Pectobacterium actinidiae
Brite
KEGG Orthology (KO) [BR:
pacb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pacb03019
]
M9782_13735 (hrpA)
Enzymes [BR:
pacb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
M9782_13735 (hrpA)
Messenger RNA biogenesis [BR:
pacb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
M9782_13735 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
T2SSE
nSTAND3
NACHT
PhoH
BTAD
AAA_25
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
WEF13808
LinkDB
All DBs
Position
complement(3173124..3176966)
Genome browser
AA seq
1280 aa
AA seq
DB search
MLRDRQRLRRRLQGAAKVSSPQAQAAIAQDIEGEIAVARQKVENRRASCPAIHYPEQLPV
SQKKDEILEALRHHQVIIVAGETGSGKTTQLPKICLELGRGVHGLIGHTQPRRLAARTVA
DRIAAELETPLGGSVGYKVRFNDQVGDNTLVKLMTDGILLAEIQQDRLLMQYDTLIIDEA
HERSLNIDFIMGYLRQLLPKRPDLKVIITSATIDPQRFSRHFNNAPIIEVSGRTYPVDVR
YRPVVEDADDSERDQLQAIFDAVDELTREGPGDILVFMSGEREIRDTAEALTRLDLPHTE
ILPLYARLSNQEQNRVFQSHHGRRIVLATNVAETSLTVPGIRYVIDPGTARISRYSFRTK
VQRLPIEPISQASANQRKGRCGRVAAGVCIRLYSEQDFLSRPEFTDPEILRTNLASVILQ
MTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAINLAENGHYRLTPQGQQLAQLPIDP
RLARMVLEARKTGCVREVMVITAALSIQDPRERPMDKKQASDEKHRRFADKDSDFLAFVN
LWDYLRDQQKTLSSSQFRRQCRTDFLNYLRVREWQDIYTQLRQVVKELGLPVNSEPADYL
SIHCALLTGLLSHIGQKDIEKQEFSGARNARFAIFPGSGLFKKPPKWTMVAELVETSRLW
GRIAARIEPEWIEPLAQHLIKRSYSDPHWEKAQGTVMAQEKVTLFGLPIVAARKVNYSQI
DPTLAREMFIRHALVEGDWQTHHAFFRANLKLLAEVEDLEHKSRRRDILVDDETLFAFYD
QRLPHDIISSRHFDKWWKAASRDNADLLNFEKSMLIKDGAEKVSALDYPNFWHQGSLKLR
LSYQFEPGTDADGVTVHIPLPILNQVREEGFEWQIPGVRRELTIALIKSLPKPLRRNFVP
APNYAEAFLARTTPLEKGLLDALERELRLMTGVTVPREAWQWDQVPDHLKITFRVIDEKN
RTQREGKDLNALKDQLKDKVQQTLSSVADDGLEQRGLHVWSFGSLPDCYEQKRGGYSVKA
YPALVDEKDSVAIRLFDTPHQQQQVMRQGLRRLLLLNIPSPIKYLHEKLPNKAKLGLYFN
PYGKVLDLIDDCIACAVDKLIESSGGPVWQEEAFQQLHEKVRAELNDTVVDIAKQVEQIL
TAVFTINKRLKGRVDIAMALALSDIKSQMNGLVFRGFVTDNGWQRLPDVLRYLHAIERRL
EKLAQDVHRDRAQMLKVEQVQQAWQQWRNKLPAERRDDDDVKAVRWMLEELRVSYFAQQL
GTPFPISDKRVLQAMEQVEG
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atgcttcgcgatcggcaacgtctgcgccgccgtttacagggcgcggcaaaggtcagcagc
ccgcaggctcaggcggcgatcgcgcaggacattgagggggaaatcgctgtcgctcgccag
aaagtcgagaaccgacgggcaagctgtcccgcgattcactatcctgaacagcttcccgtt
agccagaaaaaagacgagatactggaagcgctgcgtcatcatcaggtgattattgtcgca
ggcgaaacgggatcgggtaaaaccacgcagttgccgaaaatctgtctcgaactgggtcgc
ggtgtgcacggtctgatcggccacactcagccgcgtcgtctggcagccagaaccgttgct
gatcgcatcgccgccgagctggaaacgccgctgggtggcagcgtcggttataaagtccgg
tttaacgatcaggtcggtgacaatacgctggtcaaactgatgaccgacggtattttgctg
gctgaaattcagcaggatcgcctgttgatgcagtacgacacgttgattatcgacgaagcg
cacgaacgcagcctgaatattgatttcatcatgggctacttgcgtcagctgttgccaaag
cgccccgatttaaaagtgattattacgtcggccacgatcgatccgcagcgcttctcccgc
cattttaataacgcaccgatcattgaagtgtccggccggacctatccggtagacgtgcgc
tatcgtcccgtggtggaagatgcggatgacagcgagcgcgatcaactacaggcaattttt
gatgcggtcgatgaactgacacgcgaaggaccgggggatattctggtcttcatgagcggc
gaacgtgaaattcgcgatacggcagaggcgttgacccgtctcgatttaccgcataccgag
atcctcccgctgtacgcgcgtctgtcgaatcaggaacagaaccgcgtctttcaatctcat
cacggccgccgcattgtgctggcgaccaacgtggcggaaacctcgctcaccgtgccaggg
attcgctatgtaatcgacccaggtaccgcacgtatcagccgctacagcttccgcaccaag
gtacagcgcctgccgattgaaccgatctcgcaggcgtcggcgaatcagcgtaaagggcgc
tgtggccgtgtcgctgccggggtgtgtattcgtctctattccgaacaggatttcctgtcg
cggcctgaatttaccgatcctgaaattcttcgcaccaatctggcttccgttattctgcaa
atgacatcgttggggctaggcgatatcgccgcgtttccatttgttgaagcgccggataag
cgcaatattcaggacggtgtgcggttgttggaggaactgggggccattaatctggcggag
aacggacattatcgcctgacaccgcaggggcaacagctggcgcaattaccgatcgatccg
cgtttggcgcgaatggtgctggaagcccgtaaaaccggctgtgtgcgtgaagtgatggtg
atcactgcggcgctgtcgatccaggacccgcgcgaaaggccgatggataaaaaacaggcg
tcggatgagaaacatcgtcgttttgctgataaggactctgattttctggctttcgtcaat
ctgtgggattacctgcgcgaccagcaaaaaacgctttcttccagccagttccgccgccag
tgtcgcacagatttccttaactatctgcgtgtgcgcgaatggcaggatatctacacgcag
ttgcgtcaggtggtgaaagaactggggctgccggtcaacagcgaacctgccgattacctg
agtattcactgtgcgctactcactggcctgttgtcgcatatcgggcagaaagatattgag
aaacaggaattcagcggcgcgcgcaacgcacggtttgcgatttttcctggctccggatta
ttcaaaaagccgcctaagtggacgatggtcgctgaactggtggaaaccagccgtctgtgg
gggcgtattgccgcacgtattgaacccgagtggatcgaaccgctggctcaacatctgatt
aagcggagctatagcgatccccactgggagaaagcgcagggcacggtgatggcgcaggag
aaggtgacactcttcggactgccgattgtcgcggcgcgcaaggtgaattacagccaaatt
gatccgacgctggcgcgtgagatgttcatccgccatgcgctggtggaaggtgactggcaa
acgcatcacgcctttttccgcgccaacctcaagctgctggcggaggttgaagatttagaa
cacaaatcgcgccgccgcgacattctggtggatgacgagacgttgtttgctttctacgat
cagcgtttgccgcacgatatcatctcgtcgcgccactttgacaagtggtggaaagccgcc
agccgggacaatgccgacctgcttaattttgaaaagagcatgttgatcaaagacggtgcg
gagaaggtcagtgcgctggattacccaaatttctggcatcagggcagcctgaaattacgc
ttgtcctatcagttcgaaccgggcacggatgccgatggcgtaaccgtacatattccgttg
cctattctcaatcaggtacgtgaagagggcttcgaatggcagattcccggcgtgcgccgt
gaactgacgattgcgctgattaaatcgttgcctaaaccgttacgccgtaactttgttccc
gcgccgaactatgccgaggcgtttctggctcgcaccacgccattagagaaagggctattg
gatgcgctggaacgtgaactgcggctgatgacgggcgtcacggtgccgcgtgaggcatgg
cagtgggatcaggtgcccgatcatctgaaaatcacattccgcgtcattgatgagaagaat
cggacgcagcgggaaggtaaagacctgaacgcgttgaaagatcagctcaaggataaagtg
cagcaaacgctgtcatccgtagcagatgacgggctggagcagcgcggcctgcacgtctgg
agttttggttcgctgccggactgctatgagcagaagcggggaggatattcagtcaaagcc
tatccggcgctggtggatgaaaaagatagcgtggcgattcgcctgttcgatacgccgcac
cagcagcagcaggtgatgcggcaggggttgcgccgtctgttactgttgaatattccgtcg
ccgatcaaatatctgcatgaaaaactgccgaacaaggcaaaactcggtctctatttcaat
ccgtacggcaaagtgttggatctcatcgatgactgtatcgcctgcgcggtggacaaattg
attgaatcatccggtggcccggtctggcaggaagaagccttccagcaactgcatgaaaaa
gtgcgtgcggagctgaacgatacggtggttgatatcgccaaacaggttgagcaaatcctg
acggccgtcttcaccattaacaagcgtctgaaagggcgtgtagatatagcgatggcgctg
gcgttaagtgatatcaagagccagatgaacggtctggtgttccgtggttttgtgaccgac
aacggctggcagcgtctgccggatgtgctgcgttatctgcacgcgatagaacgccgtctg
gagaaactggcgcaggatgtccaccgcgatcgggcacagatgctgaaagtagagcaggtt
caacaggcgtggcagcagtggaggaataagctgcctgcggagcgacgtgatgacgacgac
gtgaaagcggtgcgttggatgcttgaggagctgcgcgtcagctactttgcccagcagcta
gggacgccattcccgatctcggataagcgcgtcttgcaggcaatggagcaagtcgaaggg
taa
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