Pectobacterium actinidiae: M9782_16945
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Entry
M9782_16945 CDS
T08879
Name
(GenBank) polysaccharide lyase family 1 protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pacb
Pectobacterium actinidiae
Pathway
pacb00040
Pentose and glucuronate interconversions
pacb01100
Metabolic pathways
pacb02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pacb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
M9782_16945
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
M9782_16945
Enzymes [BR:
pacb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
M9782_16945
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Glyco_hydro_43
Beta_helix
DERM
Motif
Other DBs
NCBI-ProteinID:
WEF10871
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All DBs
Position
complement(3866266..3867834)
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AA seq
522 aa
AA seq
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MFRTVMRTGRLRTCAVAIALSGIVLSGCDNSHKPVEEAAPPDLQVKMAPFGWAAQYHNTD
GKFYATTGGEGAHENSIYVVTSRQELKDALNNIRSPRYIAGDADAELKAKLEPKIIYWQG
TIRGDDLGNGRYANAEDYKTKPNKTTFDFDLYVKAFDQNYMAQLKATVDAGGSDAAAAST
QLNLLKKQNGQRSQYANNQKAQIQFQVPPNTTILGVGSEAKLVEGYLSLNTLSHTFGKTD
NSNIIIRNITFQAPRDFAPAWDAGDGDKGNWNARYDSVSINASKNVWIDHCTFTDGEYPD
HLEPVLFGKHIQRHDGLLDIEDGADYLTISYNIFAQHDKTVLIGSGDGDKGEYRITFEGN
LWDNSVQRSPRVRFGQVHLLNNYHRGATDTNYSILYAIGMGFDSSILSESNVFNFQGGGA
DENLIIGAYKGSKFKDNGSWFNGNPASNLNQIAVDKCGALQEAEKAAATTSGKAVPAWAL
ETCTNELEWSPPYVYSAGKSIAAVEKYVLENAGAGKLDISLP
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgtttagaacggttatgaggactggtcgtttacgcacctgtgcggtagctattgcgctt
tccgggatcgtgctttctgggtgtgataatagtcataagcccgtggaagaagcggctcca
cccgatttacaggtgaaaatggcaccgtttggttgggctgcgcaatatcataatacggat
ggtaaattttatgcgacgacggggggcgagggcgcacatgaaaatagtatttatgtcgtc
accagccgtcaggaattaaaagatgcattaaataatatccgcagtcctcgttatatcgcc
ggtgatgccgatgcggaattgaaggcaaaattagaacccaagattatctactggcaaggg
actatccgtggcgatgatttaggtaatgggcgctatgccaacgctgaggattataaaacc
aaaccgaataaaacaacgtttgattttgatttatacgtcaaagcattcgatcagaattat
atggcgcagttgaaagcgacagtggatgctggtggaagcgacgcggcggctgccagtaca
cagcttaacctgttgaaaaaacagaatggtcaacgttcgcagtatgccaataaccagaag
gcgcagattcaatttcaggtaccgccaaataccacgattttaggcgtgggtagcgaggcc
aaactggtggaaggctatttatccctcaataccctaagtcatacgttcggtaaaacggat
aacagtaacattattatccgtaatattacgtttcaggcaccgcgtgactttgccccagcc
tgggatgcgggcgacggcgataaaggtaactggaatgcgcgttatgattccgtatcgatt
aatgccagtaaaaatgtctggatcgatcactgcacatttacggacggtgaatatccagac
catttagaaccggtgctatttggtaagcatatccagcgccacgacggtttattggatata
gaagatggtgccgactacctgacgatttcctacaacattttcgcccaacatgacaaaacg
gtattaattggctccggcgatggtgataaaggggaatatcgaatcacctttgaaggcaat
ttatgggacaacagcgtacagcgttcgccgcgtgttcgttttggtcaggtgcatttgctg
aataactaccatcgcggggcaacggatacgaattactctattctgtatgccattgggatg
gggttcgattcatccattctttccgaaagtaacgtgtttaatttccaggggggtggtgcg
gatgaaaatttgatcatcggtgcttacaagggaagcaaatttaaagacaacggctcctgg
ttcaatggcaatccggcaagtaatttgaatcaaatcgcagtagacaaatgcggcgcattg
caagaagccgagaaggctgcggctacaacgtctgggaaggctgtaccggcatgggcgctg
gagacctgcaccaatgaactggagtggagcccgccttatgtgtatagcgcagggaaatcc
atcgccgccgttgagaaatatgtattggagaatgctggggcggggaaactggatatttct
ttgccgtag
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