Pectobacterium actinidiae: M9782_19340
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Entry
M9782_19340 CDS
T08879
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pacb
Pectobacterium actinidiae
Brite
KEGG Orthology (KO) [BR:
pacb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pacb03009
]
M9782_19340 (rlmD)
Enzymes [BR:
pacb01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
M9782_19340 (rlmD)
Ribosome biogenesis [BR:
pacb03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
M9782_19340 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
PCMT
RrnaAD
MTS
Methyltransf_11
Methyltr_RsmB-F
Cons_hypoth95
TRM5-TYW2_MTfase
Methyltransf_4
Ubie_methyltran
FtsJ
Methyltransf_12
UPF0020
Methyltransf_32
Methyltransf_15
Methyltransf_23
Methyltrans_SAM
PDGF
Ribosomal_L22
CMAS
Motif
Other DBs
NCBI-ProteinID:
WEF11285
LinkDB
All DBs
Position
complement(4390800..4392149)
Genome browser
AA seq
449 aa
AA seq
DB search
MAQFYSPNRRVTTRKAIPAKNLTVTVTSLDPFGQGVARHEGKTVFVTGVLPGEQAEIQLT
EEKRQFSHAKLKRLLTPSPQRVAPPCPHFTRCGGCQQQHADIALQQSSKSAALVRLMTRE
TGAELPEASLIAGTPYAYRRRARLALYFQAKERRLLMGYRQSNSHDLVDIKACPVLRPEL
EALLQPLRDCLNRLKAVKRLGHVELVQAENGPLLVLRHLDPLHSSDQQALRDFAQQQDVS
VYLASDADSLTCLQGEEPVYHVAGLTLAFSPRDFIQVNDAVNQQMVAQALAWLDVQPQDR
ILDLFCGMGNFTLPLAQRAASVVGVEGVTALVEKGRENARRNGLSNVTFFHQNLEDDVTQ
QPWAAQGFDKILLDPARAGAAGVMEQITRLAPERVVYVSCNATTLARDSKVLLAAGFRLA
NVAMLDMFPHTGHLESMALFLHDTGARKV
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactctccaaaccggcgtgtgacgacccggaaagcgattcctgctaag
aacctcactgttacggtcacgtcgcttgatccgtttggacagggggtagcgcgtcacgag
ggcaagacggtgtttgtcacgggggtattgccgggagagcaggccgagatccaactgacg
gaagagaagcgtcagttttcgcatgcaaaacttaaacgtctcctgacgcctagcccgcag
cgtgttgcgccgccatgcccgcattttacccgctgtggcggctgccagcagcagcacgcg
gacatcgcgttgcaacagagcagtaaatcggctgcattggtgcgtctgatgacacgggaa
acgggtgctgagctgcctgaagcctcattgatcgctggcacaccttatgcctatcggagg
cgtgcgcggcttgcgttatactttcaggcaaaagagcggcgtctgttgatgggctatcgg
cagtcaaattctcacgatctggtggatatcaaagcctgtccggtgttgcgccccgagctt
gaagcgctgttgcaaccgctgcgcgactgcctgaaccgattaaaggcggtgaagcgcctt
gggcatgtggagctggtgcaggcggagaacggtccgctgttggtgctaaggcaccttgat
ccacttcattcatcggaccagcaggcgctgcgtgattttgcgcagcagcaggatgtgtcg
gtttatctggcatcggatgccgactcgctgacgtgtttacagggtgaagagccagtttat
cacgttgccgggctgacgctggcctttagcccgcgcgatttcattcaggttaatgatgcg
gtgaaccagcagatggtcgcgcaggcgctggcatggctggatgtgcaaccgcaggataga
atattagatctgttttgtggcatgggtaacttcacgctaccgctggcacagcgtgccgcc
agcgtcgtcggtgtggaaggggtgaccgcgttagttgagaaaggacgcgaaaatgcccga
cgcaatgggctgtccaatgtcacattttttcaccaaaatcttgaagatgacgtcacgcag
cagccgtgggccgctcagggttttgataagatattacttgatccggcacgtgcgggcgcg
gcaggcgtgatggagcagataaccagactggcacctgaacgggtggtgtatgtctcttgt
aatgccacgacgctagcgcgcgacagcaaagtattactggcagcaggtttcaggctggcg
aatgttgcgatgctggatatgtttccacataccggtcaccttgaatcgatggcactgttt
ttgcacgacaccggcgcgcgaaaggtgtaa
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