Pectobacterium actinidiae: M9782_21625
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Entry
M9782_21625 CDS
T08879
Name
(GenBank) polysaccharide lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pacb
Pectobacterium actinidiae
Pathway
pacb00040
Pentose and glucuronate interconversions
pacb01100
Metabolic pathways
pacb02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pacb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
M9782_21625
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
M9782_21625
Enzymes [BR:
pacb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
M9782_21625
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
WEF11702
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Position
4899040..4900164
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AA seq
374 aa
AA seq
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MKYLLPSAAAGLLLLAAQPTMAANTGGYATTDGGDISGAVKKTARSLQEIVDIIEAAKKD
SSGKAVKGGAYPLVITYNGNEDALIKAAEANICGQWSKDPRGVEIKEFTKGITILGTNGS
SANFGIWMVNSSNVVVRNMRFGYMPGGAKDGDAIRIDNTPNVWIDHNEIFAKNHECEGTP
DGDTTFESAIDIKKASTNVTVSYNYIHGVKKVGLSGSSNTDTGRNLTYHHNIYSDVNSRL
PLQRGGQVHAYNNLYSGVTDSGLNVRQKGIALIESNWFENAKNPVTARNDTSNFGTWELR
NNNITSPSDFAKYNITWGKPSSAHINADDWKSTGKFPAVSYSYSPVSAQCVKDKLASYAG
VGKNQAVLTAANCK
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgaaatacctactgccttctgcagccgctgggctgttgctgcttgctgcccaacctacg
atggcggcaaatacagggggttatgccaccacggacggcggcgacatttccggtgcggtg
aaaaagacagcgcgttctctgcaagagatcgtcgatatcattgaagctgcgaaaaaagat
tcaagcggtaaagcggtcaaaggcggagcctatccgctcgtcattacctacaacggtaat
gaagatgcgctaatcaaagccgctgaagctaacatctgcggccagtggagcaaagatccg
cgcggtgtagaaatcaaagagttcaccaaggggatcaccatcctcggtaccaacggttct
tccgctaacttcggtatctggatggttaactcttccaatgttgtcgtgcgtaatatgcgt
ttcggctacatgccgggcggagcaaaagatggcgatgccatccgcatcgataacacacca
aatgtctggatcgatcacaacgagatcttcgccaagaaccacgaatgcgaaggtacgcca
gacggtgacacgacctttgagtctgctattgatattaaaaaagcatcaaccaacgtcacg
gtgtcgtacaactatatccatggcgtgaaaaaggtcggtctgagcggttcaagcaacacg
gataccggccgtaacctgacttaccatcacaacatttacagcgatgttaactcacgtctg
ccactacagcgtggtggtcaggtacacgcatacaataacttgtatagcggtgttacagat
tcaggcctgaatgtccgtcagaaagggattgcgctgatcgaaagcaactggttcgaaaat
gcgaaaaacccagtaacggcacgcaacgatacttccaatttcggtacctgggaactccgt
aacaacaacattaccagcccatctgattttgctaaatacaacatcacttggggtaaacct
tcttcagctcacatcaatgcggatgactggaaaagcaccggtaaattcccagctgtctca
tatagctactctccagtttctgcacaatgcgtgaaggataaactggcaagctacgctggc
gtaggtaaaaaccaggcagtactgacagcagccaactgtaaataa
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