Propionibacterium acidifaciens: EGX94_00305
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Entry
EGX94_00305 CDS
T05713
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pacd
Propionibacterium acidifaciens
Pathway
pacd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pacd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EGX94_00305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pacd03021
]
EGX94_00305
03019 Messenger RNA biogenesis [BR:
pacd03019
]
EGX94_00305
Transcription machinery [BR:
pacd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
EGX94_00305
Messenger RNA biogenesis [BR:
pacd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EGX94_00305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
Spore_III_AA
VWA_2
FANC_SAP
Motif
Other DBs
NCBI-ProteinID:
AYW78876
LinkDB
All DBs
Position
complement(68893..70662)
Genome browser
AA seq
589 aa
AA seq
DB search
MRLPELKAVAAKLGIRGAGSMRKSALVEAINAQRPGAGAERGDAGSAAEGHGAEGRTGQQ
APRRRRGGEGQRPDRGGGAAGGTGAERHADKDADEAPLSTADAVAARLEAAEQRSGRHQR
PARERAAEGRDGSSDRGAESDTAGEVGARLDRLSGRGGESDAGRSAGGEQRRNRRDDEES
GGSRRSRRRRNRDRSNRRRGGMNELEDPVVREDDVLLDVAGILDVLDNYAFVRTSGYLPG
PNDAYVSLSMVRRNGLRKGDVITGAIRQPREGERREKYNPLVRLDTVNGAAPEAMRQRPE
FAKLTPLYPQERLRMETTPGNMTGRIIDLMSPIGKGQRGLIVSPPKAGKTMVMQNIANAI
TLNNPEVHLMVVLVDERPEEVTDFQRTTTAEVIASTFDRPAEDHTTIAELAIERAKRLVE
LGRDVVVLLDGITRLGRAYNLAAPASGRILSGGVDSAALYPPKKFFGAARNIENGGSLTI
LATALVETGSKMDEVIFEEFKGTGNMELRLSRQLADKRIFPAINVEASGTRREELLMSAQ
ERDIIWKLRRVLSGLDEQKASETLLGRLRKTRNNSEFLVVISRTTPGND
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgcccgaactgaaggcggtcgccgcaaaactcggcatcaggggcgccgggagc
atgcgcaagagcgctctggtcgaggcgatcaacgcccagcgccccggcgccggcgccgag
aggggcgacgcgggctccgcagccgaggggcacggcgccgaggggcgcaccgggcagcag
gcaccgcgccggcgccgcggcggcgagggccagcgcccggaccgcggcggcggggccgcc
ggcgggaccggggccgagcggcacgccgacaaggacgccgacgaggcccctctgtcgacg
gccgacgccgtggccgcccgcctcgaggcggccgagcagcgctccggccgtcaccagcgc
cccgcccgcgaacgtgccgccgagggccgcgacgggtcgtccgacaggggcgccgagtcc
gacaccgccggcgaggtcggggcccgcctcgaccggctctccggccggggcggcgagtcg
gacgccggcaggtccgccggcggcgagcagcgccgcaaccgccgcgacgacgaggagtcc
ggcggctcgcgccgctcgcgccgacgccgcaaccgcgatcgctccaaccgtcgtcgcggc
ggcatgaacgagctcgaggacccggtggtgcgcgaggacgacgtcctgctcgacgtcgcg
ggcatcctcgacgtcctcgacaactacgccttcgtccgcaccagcggctacctgcccggc
cccaacgacgcctacgtctcgctgtcgatggtccgcaggaacggcctgcgcaagggcgac
gtcatcaccggcgccatccgtcagccccgcgagggcgagcgccgcgagaagtacaacccc
ctcgtgcgcctcgacaccgtcaacggcgccgcccccgaggccatgcgccagcgccccgag
ttcgccaagctcacgccgctgtacccgcaggagcgcctgcgcatggagacgacgccgggc
aacatgaccgggcgcatcatcgacctcatgtcgccgatcggcaagggccagcgcggcctc
atcgtctccccgccgaaggccggcaagacgatggtcatgcagaacatcgccaacgccatc
accctcaacaaccccgaggtgcacctcatggtcgtcctcgtggacgagcgccccgaggag
gtcaccgacttccagcgcacgaccacggccgaggtcatcgcctcgaccttcgaccgcccg
gccgaggaccacacgacgatcgccgagctggccatcgagcgcgccaagcgcctggtcgag
ctgggacgcgacgtcgtggtcctcctcgacggcatcacccgcctggggcgcgcctacaac
ctggccgccccggcctcgggacgcatcctgtccggcggcgtcgactcggcggccctctac
ccgcccaagaagttcttcggggccgcccgcaacatcgagaacggcggctcgttgacgatc
ctcgccaccgcgctcgtcgagaccggctccaagatggacgaggtcatcttcgaggagttc
aagggcaccggcaacatggagctgcgcctctcgcgccagctcgccgacaagcgcatcttc
ccggccatcaacgtggaggcctccggcacccgccgcgaggagctgctcatgagcgcccag
gagcgcgacatcatctggaagctgcgccgggtgctgtccgggctggacgagcagaaggcc
tccgagacgctgctcgggcggctgcgcaagacccgcaacaactcggagttcctcgtcgtc
atctcgcggacgacgcccgggaacgactga
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