Propionibacterium acidifaciens: EGX94_00550
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Entry
EGX94_00550 CDS
T05713
Name
(GenBank) exodeoxyribonuclease V
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pacd
Propionibacterium acidifaciens
Pathway
pacd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pacd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
EGX94_00550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pacd03400
]
EGX94_00550
Enzymes [BR:
pacd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
EGX94_00550
DNA repair and recombination proteins [BR:
pacd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
EGX94_00550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AYW76775
LinkDB
All DBs
Position
126248..129664
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AA seq
1138 aa
AA seq
DB search
MTTDPSTDPLAPGPVFDPTADLPEGTTVLEASAGTGKTHAIAATTARLVALGRCRIDRVM
LVTFARTASLELRSRVHERLASSARVLERAAAGGTPDGLDPVDAQLCGGRADELIERLGR
LRRALADFDRAVIATTHEFCSRLLAELGVLVDHDTTMRFVDDLDEVRSQVVDDAYLARAT
AGTAGMGHEQAGIIGRAVLEHAEPRLLPVPDDADDEQGRLAFAADVRTRMAHRTRQMGVY
GYDDMIRRVDEALGDPVTGELAARTLAARFDLVMVDEFQDTDPLQWRILERAFHHRTSLV
VIGDPKQAIYGFRGADLQAYLDARATADQCFTLDRNHRSDAPVVEGIAQLFGRASLGRPD
QAIALAPVTSTHTRARLRIDRADGAPAVQVRAIAPGEEQTAAGARETIAADLVREFGELL
ARGHLDDGGTVRPLRADDLAVLVRTRRVGEQLRRALTGAGIPAVFTGGAGIFASDGALAW
QRLLDAMCDPRPPLLFRLSLTELVGWSPGRLARADDEARNQLLVLVKSLRGTMADAGPSG
ILERLCAQQDDGGPGLMARLLADARDGERRCTDLRHVTELLERERRRSGRDLAGLRDWLA
QSIREAAGRADDDAVRRLETDRSAVTVMTIHRAKGLQFPVVALPDMADKYIGDRPADRLG
RVLVHEGGELGLDLFGDRSAARHRAKLAEEQAEDLRLLYVAATRAQSRLVLWWARTKRNT
SRSALHRLLMNPPGDPAPAPSLPVGADVERAAAGREHVQLVVVPRPTGAPAAPAPPPVDG
PARLVGRELADTIDRTWSRTSYSGLTAGLHGTAGPLPGLDERGTDDEPPLEGAPAGPRTA
APDPHDDATPLSTLPGGTQFGSLVHSVLEVVDPAGPRLAERTTAAVTRMLTRWPMAGVPA
ERLARGLLAVMDTPLGELTAWASLRRIGAANRLAELDFDLPLGSASGSRELGAIAELWGD
RSLVPSDDPLVDYGGALAASGAAHAALRGFLTGSIDAVLRLPGPGAAGEPGRPVPSGTAR
YALIDYKTNRIPTRPHESLGPHVYTPAAMTRAMIEAHYPLQALLYCVGLHRYLRWRLPDY
DPERQFAGVGYLFVRGMAGPDGPAGTAMPPGVFTWHPRIGLVEAASRVLSGSRTGGAR
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atgaccactgatccgtcgaccgatccgctcgccccgggcccggtcttcgaccccacggcc
gacctgccggagggcaccaccgtcctcgaggccagcgccggcaccggcaagacccacgcc
atcgccgcgacgaccgcgcgcctcgtcgccctcggccgctgccgcatcgaccgcgtcatg
ctcgtcaccttcgcccgcacggcgtccctcgagctgcgctcgcgcgtccacgaacggctg
gcctcgagcgcccgcgtcctcgagcgggccgccgcgggcgggacccccgacggcctcgac
ccggtcgacgcgcagctgtgcggcggtcgggccgacgagctgatcgagcgcctgggcagg
ctgcggagggcgctcgccgacttcgaccgcgccgtcatcgcgacgacccacgagttctgc
tcccggttgctggccgagctgggcgtgctcgtcgaccacgacaccaccatgcgcttcgtc
gacgacctggacgaggtgcgatcccaggtcgtcgacgacgcctatcttgcgcgcgccacc
gccgggacggcgggcatgggccacgagcaggcgggcatcatcggccgggcggtgctggag
cacgccgagccgaggctcctgcccgtgcccgacgacgccgacgacgagcagggccgcctg
gccttcgccgccgacgtgcggacccgcatggcgcaccgcacgcgtcagatgggcgtctac
ggatacgacgacatgatccgacgcgtcgacgaggccctcggggacccggtcaccggcgag
ctcgccgcgcggacgctcgccgcgcgcttcgacctcgtgatggtcgacgagttccaggac
accgacccgctgcagtggcgcatcctcgaacgcgccttccaccaccgcacgagcctggtc
gtcatcggtgatccgaagcaggcgatctacggcttccgcggcgccgatctgcaggcctac
ctcgacgcgcgggccacggccgaccagtgcttcaccctcgaccgcaaccaccgcagcgac
gcccccgtcgtcgagggcatcgcgcagctcttcggacgggcctcgctcgggcggcccgac
caggccatcgccctggcgccggtcacgagcacccacacgcgggcccgtctgcggatcgac
cgggccgacggcgcgcccgccgtccaggtgcgggccatcgcccccggtgaggagcagacc
gcggccggggcccgcgagacgatcgccgccgacctggtgcgcgagttcggcgagctgctc
gcccgcggccacctcgacgacggcgggaccgtccgcccgctgcgggcggacgacctggcg
gtcctcgtgcgcaccaggcgggtcggtgagcagctgcgccgcgcgctcaccggggccggc
atcccggccgtcttcaccggcggggcgggcatcttcgcctccgacggcgccctcgcctgg
cagcggctgctcgacgccatgtgcgatccccgcccgccgctgctgttccggctgtccctg
accgagctggtcggatggagccccgggcgtctggcgcgcgccgacgacgaggcccgcaac
cagctgctcgtcctcgtgaagtcgctgcgcgggacgatggccgacgcgggcccgtccggg
atcctcgagcgcctgtgcgcccagcaggacgacggagggcccggcctcatggcccggctg
ctcgccgacgcgcgcgacggcgagcgacggtgcaccgacctgcgacacgtcaccgagctg
ctcgagcgcgagcgccgccgctcgggacgcgacctggcgggcctgcgcgactggctcgcc
cagtcgatccgcgaggcggccggacgggcggacgacgacgccgtgcgccgcctcgagacc
gaccgcagcgccgtcaccgtcatgacgatccaccgggcgaagggcctgcagttcccggtg
gtggcgctgcccgacatggcggacaagtacatcggcgacaggccggccgaccggctgggc
cgcgtcctcgtccacgagggcggcgagctcggcctcgacctgttcggcgaccgctccgcc
gcgcgtcaccgggcgaagctcgccgaggagcaggccgaggacctgcgcctgctctacgtg
gcggccacccgcgcgcagagccgcctcgtcctctggtgggcccgcacgaagcgcaacacc
tcgcgctcggcgctgcaccgcctgctgatgaatcccccgggcgacccggcgccggccccg
tccttgcccgtcggcgccgacgtcgagcgggcagccgccggccgcgagcatgtgcagctg
gtcgtcgtgccccgcccgaccggggccccggcggcgcccgcgccgccgcccgtcgacggc
ccggcgcgcctcgtcgggcgcgagctcgccgacacgatcgaccgcacgtggtcgcgcacc
tcgtactcggggctcaccgccgggctgcatgggacggcggggcccctgcccggcctcgac
gagcgcggcaccgacgacgaaccgccgctggagggggcccccgcggggccgcggacggcc
gcgccggacccgcacgacgacgccacgccgctgtcgacgctgcccggtggcacccagttc
ggctcgctggtgcactcggtcctcgaagtcgtcgacccggcagggccgcggctggccgag
cgcaccaccgccgcggtcacccggatgctcacccgctggccgatggccggggtgcccgcc
gagcggctggcccggggcctgctggccgtcatggacacgccgctgggcgagctcacggcg
tgggcgagcctgcgccgcatcggcgccgcgaaccgcctcgccgagctcgacttcgacctg
cccctcggctcggcctcgggttcgcgggagctcggggcgatcgccgagctgtggggcgac
cgctcgctcgtaccgtccgacgacccgctcgtcgactacggcggggccctggcggccagc
ggcgccgcccacgcggccctccgcggcttcctcaccggctcgatcgacgccgtgctgagg
ctcccggggcccggcgcggccggggagccggggcgaccggtcccgagcggcacggcccgc
tacgcgctcatcgactacaagacgaaccgcatccccacccgcccgcacgagtcgctcggc
ccgcacgtctacacgcccgcggcgatgacgcgggcgatgatcgaggcccactaccccctc
caggcgctgctgtactgcgtgggcctgcaccgctacctgcgctggcgcctgcccgactac
gaccccgagcggcagttcgccggcgtcggctatctgttcgtcaggggcatggccggcccc
gacggcccggccgggaccgcgatgccgccgggcgtcttcacctggcacccgcgcatcggc
ctcgtcgaggccgcctcacgggtcctctccggctcccggacgggaggtgcccgatga
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