Syntrophotalea acetylenica: A6070_00430
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Entry
A6070_00430 CDS
T04585
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pace
Syntrophotalea acetylenica
Brite
KEGG Orthology (KO) [BR:
pace00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pace03016
]
A6070_00430
Enzymes [BR:
pace01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
A6070_00430
Transfer RNA biogenesis [BR:
pace03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
A6070_00430
Prokaryotic type
tRNA splicing ligases
A6070_00430
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Asparaginase_C
Motif
Other DBs
NCBI-ProteinID:
APG42769
UniProt:
A0A1L3GFH9
LinkDB
All DBs
Position
complement(82279..83721)
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AA seq
480 aa
AA seq
DB search
MTVKVQQLDACRWRLPREGAMRTDGLVFANRAMMAALQKEQALEQVRNVATLPGIVGPSL
AMPDIHWGYGFPIGGVAAFDADEGIVSPGGVGYDINCGVRLLRSNLQAQELRSCLQQLAD
ALFRNVPSGVGSHRRDLRLTLAQERKVLQQGARWAVAQGMGNELDLQHIEDGGCLAGADP
DLLSERALERGRDQLGTLGSGNHFLEIQMVDEIREPRLADVLGLFPGQVTVTIHTGSRGL
GYQVCDDYLRIMLRAAARYGISLPDRQLCCAPLNSPEGRQYLAAMACAANFAFANRQLIT
AWVRESFEQVLHQSAAAMGLSVIYDVCHNIAKYEQHIVAGVPRRLCVHRKGATRAFPPGH
PDVPACYRAIGQPVLIPGDMGRYSYVLVGTAAGFEETFGSTCHGAGRLLSRHAAKKLASG
RRIEEELAARGIVLRAAGRGTVAEEISEAYKDVTEVVEVVQQAGIGRIVARLRPLAVIKG
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgacagtcaaggtgcaacagctcgatgcttgtcgctggcgcctaccgagggaaggtgcc
atgcgcactgatggcctggttttcgccaaccgtgccatgatggccgccctgcaaaaagag
caggctctggagcaggtgcgcaatgtggcgaccttgcccggtattgtggggccatcactg
gccatgcccgacattcactggggatacggctttcccattggtggcgtggcggccttcgat
gccgatgaaggcatcgtttcgcccggcggggtcggttacgacatcaactgcggggtacgt
ttgctgcggtcaaatctccaggcgcaggaattgcgttcctgtctgcagcaactggccgat
gcgctgtttcgcaatgtgccctccggggtcggctcgcatcggcgggatctcaggttgacc
ttggcgcaagagcgcaaggtgctgcagcagggggcgcgctgggcggtagcccaaggcatg
ggcaacgaactggatctgcagcacatcgaggacggcggatgtcttgccggagccgatcct
gacctgctttcggagcgggctctggagcggggccgcgaccagctcgggacgcttggcagc
ggcaaccattttctggaaatccagatggtggacgagattcgcgaaccacgtctggccgat
gtactcggcctgttcccagggcaggtgacggtcactatccacaccggcagtcgcggactc
ggttatcaggtctgcgacgattatttgcgcattatgctgcgggccgcagccagatacggc
atttccctgccagatcggcagctgtgctgcgcgccgctgaacagtccggagggccgccag
tatctcgccgccatggcctgcgcggcgaattttgcgtttgccaaccggcaactgataacc
gcctgggtgcgcgaatccttcgagcaggtactgcatcaaagtgcagccgccatgggtctg
tcggtgatttatgatgtttgccacaatatcgccaaatacgagcaacatatcgttgccggt
gtcccgcgccgactgtgcgtgcaccgcaaaggtgctacgcgggcctttccgccggggcat
cccgacgttccggcatgttatcgcgccatcggccagccggttctgatccccggtgacatg
gggcgctattcctatgtgctggtcggcaccgctgccggttttgaagagacattcggctcc
acttgccacggtgccggaaggttactgtcgcggcatgccgcaaaaaaattggcatcgggg
cgtcgcatcgaggaggagcttgccgcccgtggcattgttttgcgggctgccgggcgcggt
accgtggccgaggagatatccgaagcctataaggatgtcacggaggtggtggaggtggtg
cagcaggccggcatcggccgcattgttgccagactgcggccgctcgcggttatcaagggg
tag
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