Syntrophotalea acetylenica: A6070_00800
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Entry
A6070_00800 CDS
T04585
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pace
Syntrophotalea acetylenica
Pathway
pace03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pace00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A6070_00800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pace03400
]
A6070_00800
Enzymes [BR:
pace01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A6070_00800
DNA repair and recombination proteins [BR:
pace03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A6070_00800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
MFD_D3
Cas3-like_C_2
UB2H
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
APG42833
UniProt:
A0A1L3GGG7
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All DBs
Position
163408..166893
Genome browser
AA seq
1161 aa
AA seq
DB search
MKPADLHMDRHPALEELSRALNDVPRAELLGMTGSSSAFVLARLLADSPEPLLILAASPE
QATRMAADLGFYLGNPGQVVCLPHWEMRPYEALLPHPGVEAARLAALAVLADGRARALVL
TVRSAMQRVMPRPILARLRGCLRENEHHPRETLLSRLADLGYHPVPLVEDPGTFSVRGDL
LDLFPPASREPVRIEFFGDQIERMRPFDPISQRSRGEKIPALELLPAREMILAGEYLDNF
ARNLKQRADSLGLARPLREALLEEAREGLLGPGHSFLMPLCYNGLDSIFDYALPGGRLVC
LDPSAIAQEKDHLDDEVREGEARLADRGELYLPGEALYLTGDEMDRRLRGMPRLDIPSMR
LYHLEEAPVQLVFRTDGNADLRSRQQQDGGLAAQLADRILAWQQDAWRLLLVCHQQGQAD
RLRSLLAGRGLDLPLLPDVAVSALRPGHPVITLGDLSVGFRLPEERLAVVTEEEIFGQRT
RRSGAAEARAKARLSSLAELREGDLVVHADHGIGRYQGLRHLCLQGAEGDFLHLEYAGKD
RLYLPVERIEKIQKYVGVEGAAPRLDRMGGGAWEKARLKARAAVEELARELLQIYARREM
HEGFRFSPPDAMFREFEAAFPYEETPDQLAAINEVLADMQAPRPMDRVICGDVGYGKTEV
AIRAAYKAALDGKQVAVLVPTTILARQHGQTFAERLENAPVSVASLSRLNSAADQKQILA
RTADGKIDILIGTHRLLQRDVRFKNLGLLIVDEEQRFGVTHKERLKKLRAEVDLLTLTAT
PIPRTLHMSLLGLRDLSVIDTPPVDRQAIRTYVSRFDDDLIRQAILNELRRGGQVFFVHN
RVQSIGAMAEFLQNLVPEAKIAVGHGQMTEKALETVMMDFIEGRTNVLVCSTIIENGLDI
PRVNTIIVNRADCFGLAQLYQLRGRVGRSHVRAYAYLLIPGESALTHEARERLRVLTELT
ELGAGFRIASHDLELRGAGDLLGPKQSGQIAAIGFEMYAELLEDTIAELKGQQRENRIDP
EIRLGLSAFFPEKYLPDPNQRLVFYKQLACAEDEASLYALADELRDRFGALPDPALLLLE
VMKLRVMLKQLRILSADYDGHSLTLAFAEDTPVAPEKIIALLDRDARKYSFSPDFRLAVR
LGRIPAEGALDEARKALHGLV
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgaaacctgctgacctccatatggaccggcatccggccctggaagaattatctcgcgcc
ctgaacgatgtgccccgtgccgagctgctcggcatgaccggcagcagcagcgcctttgtg
ctggcgcgtctgctggccgatagccctgagccgctactgattcttgccgccagcccggaa
caggccacccgcatggcggccgatcttggtttctacctcggcaatcccggccaggttgtc
tgcctcccgcattgggaaatgcgtccctatgaagccctgctgcctcatccaggggtggag
gcagcacgactggcggcgctggcggtcctcgccgacgggcgtgcccgggctctggtgctg
accgtgcgctcagccatgcaacgggttatgccgcgtcccattctggcccgcttgcgcggc
tgcctgcgggaaaacgagcaccatccccgggaaacgctgttgtcgcgccttgccgacctt
ggttaccatcccgtaccgctggtggaggatcccggcaccttttcggtgcgcggcgatctt
ctggatctttttcccccggcttccagggaaccggtgcgcatcgagtttttcggcgaccag
atcgagcgcatgcgccccttcgatccgatcagccaacgttcgcgcggcgagaaaatcccg
gcgctggaactgctgcccgcgcgggaaatgatcctggccggcgagtacctggacaatttc
gcgcgcaacctcaagcagcgcgccgacagtctggggcttgcccgcccccttagagaagcc
cttctggaagaggcgcgcgagggcttgctgggaccggggcacagctttcttatgccgctg
tgctacaacggtctggacagtatctttgattatgcgctgcccggcggacggctggtgtgc
ctcgatccgtcggccatcgcccaggagaaagaccatctcgacgatgaggttcgcgagggc
gaagcccgtctggcggaccgcggcgaactgtacctgccgggagaggctctgtacctgaca
ggcgatgagatggatcgtcggttgcggggcatgccacgtctcgacatcccttccatgcgg
ctgtatcacctggaagaggcgcctgtgcagctggtgtttcgcaccgatggcaacgccgac
ctgcgcagccggcaacagcaggatggcggcctcgccgcgcagctggccgaccgcatactc
gcctggcaacaggacgcctggcgcctgctgctggtctgtcatcaacaggggcaggccgat
cgcctgcggtccctgctggcgggtcgcggtctggatctgccgctgctgccggatgttgcg
gtttccgctctgcggcccgggcacccggtgattaccctgggcgatctgtctgttggcttc
cgtctgcctgaggaacggcttgcggtggtcaccgaagaagagattttcggccagcgcacc
cgccgcagcggggccgccgaggcgcgggccaaagcgcgcctgtcctctctggccgaactg
cgcgaaggtgatctggtggtgcatgccgatcacggaatcggtcgctaccaggggttgcgg
catctgtgcctgcagggagccgagggggatttcctgcacctggaatatgccggcaaggac
cgcctgtatctgccggtggagcgcatcgagaagattcagaagtatgtcggggttgagggt
gccgcgccgcgccttgaccgcatgggcggaggcgcctgggaaaaagccaggctcaaggcc
cgcgcggcggtcgaggagctggcccgcgaactgctgcagatctacgcacggcgcgaaatg
cacgagggcttccgtttttcgccaccggatgccatgttccgggaattcgaggccgctttt
ccttacgaggaaacccccgatcagctggctgcgatcaacgaggtgctggcggatatgcag
gcgccgcgccccatggaccgggtcatctgtggggacgtcggctacggaaagaccgaagtc
gccatccgcgccgcctacaaagcggcactggacggtaaacaggtcgcggtgctggtgcca
accacgattctggcccgccagcatggccagaccttcgccgagcgcctggaaaatgcgccg
gtttccgtcgcttccctgtcgcggctgaacagcgccgccgaccagaaacagattctggcg
cggaccgccgacggcaagatcgatatcctcatcggcacgcaccggctgctgcagcgcgat
gtgcgctttaaaaacctggggttgctgattgtcgacgaggagcagcgtttcggcgtcact
cacaaagagaggctgaaaaaactgcgggccgaagtcgatctgctgacattgaccgctacc
cctattcccagaaccctgcatatgagcctgctggggctgcgcgatctgtcggtcatcgat
acgccgcctgtcgaccgccaggcgatccgcacctatgtcagccgtttcgacgacgacctg
atccgtcaggcgatcctcaacgagctgcgccgcggcggccaggtgttcttcgttcataac
cgcgtccagagcatcggtgccatggccgaatttctccagaatctggttcccgaggcgaaa
atcgccgtcggccacggccagatgaccgaaaaggcactggaaacggtcatgatggatttt
attgaaggcaggaccaacgtgctggtctgcagcaccatcattgaaaacggcctggacatt
ccgcgggtcaacaccattatcgtcaaccgggccgactgttttggtctggctcagctttat
cagttgcgcggccgggtcggacgttcccatgtccgcgcctatgcctatctgctgatcccc
ggagaaagcgccctgacccatgaggcccgcgagcggctgcgggtgctcaccgaactgacc
gaactcggtgccggattccgcatcgccagccacgatctggaactgcgtggcgccggcgac
ctgctcggtcccaaacaatccggacagattgccgccatcggtttcgagatgtatgccgaa
ctgctggaggacactatcgccgaactcaagggccagcagcgcgaaaaccgcatcgatccg
gaaatccgcctcggcctttccgcgttttttccggaaaaatatcttcccgatcccaaccag
cggctggtgttttacaagcaattggcctgcgccgaggatgaagcttcgctctacgccctg
gccgatgaactgcgcgaccgtttcggagctttgcccgacccggctttgctgcttctggag
gtcatgaagttgcgggtcatgctcaagcagctgcgcattctctccgccgattatgacggg
cactctctgactctggcttttgcggaagacacccctgtggctcctgaaaaaatcatcgcc
ttgctggatcgggatgccagaaaatacagcttttcacccgatttccgtcttgcggtacgg
ctcgggcgaatccctgccgagggggctctcgatgaagccagaaaggcgttgcatggcctt
gtttag
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