Syntrophotalea acetylenica: A6070_02880
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Entry
A6070_02880 CDS
T04585
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pace
Syntrophotalea acetylenica
Brite
KEGG Orthology (KO) [BR:
pace00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pace03019
]
A6070_02880
Enzymes [BR:
pace01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
A6070_02880
Messenger RNA biogenesis [BR:
pace03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
A6070_02880
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
Flavi_DEAD
ResIII
AAA_19
Motif
Other DBs
NCBI-ProteinID:
APG43194
UniProt:
A0A1L3GGY9
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All DBs
Position
618429..620957
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AA seq
842 aa
AA seq
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MNANRRLLPIDSVVDELRKALQKAPAVVLQAEPGAGKTTRVPLALLDEPWLQNKRILMLE
PRRLAASNAARYMAACLGEAVGNTVGYAIRFDRRVSAATRIEVVTEGILTRRLQSDPTLD
GVGLVIFDEFHERNLHADLALALCRDAQLGLRDDLKLLIMSATLDVDPVSRLLGNAPVLR
CPGRCHPVEICYMPRDPAGPLPEVVARAVRRALGEIEGDILVFLPGAGEIRRCQEILRKE
PAAGELLVLPLYGELPFAEQERALLPGRQRKVVLATNIAETSLTIEGVRGVVDSGFMRQA
RFHAGSGLPRLTTVRIAAANADQRAGRAGRLGPGRCYRLWSEATQGAMLPFMPAEIRTAD
LAPLALELACWGVTQAASLCWLDAPPAGALGNARDLLRLLGALDKKHRLTARGEAMARLP
AHPRIAALLLRGMEIASLPLACDLAALLEERDLLKGLSPAAQVVDSDLQPRLDALYAFRA
GQPLENGVDKATCRVVDRTARAWRQRLRTDCDALQGDSDTLAILLLAAYPDRVARRRPAD
CRRYLMVNGQGGCLSPRSGVGDAEFIVAVDVGGGRGADAMIRLASTVTRSRLETECAGHL
VWRQRVFWDAGQNKVVARKEYGFGALLLDERPAQADPAQVSAALLDGLRQLGLAALPWSP
AAVQLRWRVMTLARIFPELPWPDWSEGALLAELDDWLAPWLDGMRCLEDVSRLNLSTVLL
ARLDWRLQQALEKEAPTQLAVPSGHRVALEYRSEGPPVLAVKLQELFGLAETPCVAGGRL
AVQLQLLSPARRPVAVTQDLRSFWEEGYPEVKRELAGRYPKHPWPADPWKAVPTRSTKKA
MP
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcaaatcgtcgtttattgcctatcgacagtgttgtcgatgaattgcgaaaggcc
cttcaaaaagcgcccgcagtggttctgcaggccgaaccgggggccggaaaaaccacccgc
gtgcctctggcgctgctggatgagccctggctgcaaaacaagcggattctcatgctggaa
ccccggcgcctggccgccagcaacgccgcccgttatatggcggcgtgcctgggcgaagcg
gttggcaacacggtcggctatgccattcgcttcgaccggcgtgtttcggccgccacgcgc
atcgaagttgttaccgaaggtattcttacccgtcggttgcagtccgatccgacgctggat
ggcgtagggctggtgatctttgacgaatttcacgaacggaatctgcatgccgatctggcg
ctggccctgtgtcgggatgcgcaattggggctgcgtgacgatctgaagctgctgatcatg
tcggcgacccttgatgtcgatccggtttcccgtctactgggcaacgcgccggtgctgcga
tgccccgggcgttgccatccggtcgaaatctgttacatgcccagggaccccgcagggcct
ctgccggaggtagtggcgcgggcggtgcggcgggccttgggggaaatcgaaggcgacatc
ctggtgtttctgccgggggccggcgaaattcgccgctgccaggaaatactccggaaggag
ccggctgctggcgaattgctggtcctgcctctgtacggcgaattgccctttgccgaacag
gaaagagcgttgctgccgggaaggcagcgcaaagtggtgctggcaaccaacattgccgag
acaagcctgaccatcgaaggtgtgcggggggttgtcgacagtggcttcatgcggcaggcc
cggttccatgcaggatccggtctgccacgcctgaccactgtgcgtatcgccgccgccaat
gccgatcagcgcgccggacgcgccggccgtctggggccggggcggtgttaccgtctctgg
agcgaagcgacgcaaggggccatgctgccgttcatgcctgcggaaattcgcacggccgat
ctggcgccgctggcattggagctggcctgctggggtgtgacgcaggccgccagtctgtgc
tggctggatgcaccgccggccggggcgctgggcaatgccagggatttgctgaggctgctt
ggcgcacttgacaaaaaacatcgcctgaccgccagaggcgaagccatggcgaggcttcct
gcccatccccgcatcgccgcgctactgttgcgcggtatggaaatcgccagcctgcctctg
gcctgtgatcttgcggctcttctcgaagagcgggatttgctgaaggggctgtcacccgcc
gcgcaggtcgtggacagcgatctgcagccccggctggatgcgctgtacgcttttcgcgcc
ggtcaacccctggaaaacggcgtcgataaggcaacctgtcgcgttgtggatcgcaccgcc
agggcctggcggcagcgcctgcggacagactgcgatgcgctgcagggcgacagtgatacg
ctggcgatcctgttgctggcggcttatccggatcgtgtggcgcggcgtcgtccggccgat
tgccgacgctatctgatggtcaacgggcagggcggctgcctgtctccgcgcagcggggtg
ggggatgcggaattcatcgtggcggtcgatgtggggggagggcgtggcgcagacgccatg
atccgcctggccagtaccgttacgcgctcccgccttgaaacggaatgcgcgggacacctg
gtctggaggcagcgggttttctgggatgccgggcagaacaaggtggtggctcgtaaagaa
tatggattcggtgcgttactgcttgacgaacgtcctgctcaggccgaccctgcgcaggtg
tcggccgcgctgcttgacggcctgcgtcagcttggtctggcggcgcttccctggagtccc
gccgctgtccaattacgctggcgggtgatgaccctggcgcggatttttccagagttgccc
tggccggactggtccgaaggggccctgcttgccgaactggacgattggctcgctccctgg
ctggacgggatgcgctgtctggaggatgtttcccgactgaatctttcgacggttctgctg
gcccgcctcgattggcgcctgcagcaagcgctcgaaaaggaggctccgacccagttggcg
gtcccgagcggccatcgggtggccctggagtaccgatcggaaggcccgccggtgctggcg
gtcaaattgcaggaattattcggtctggcagaaacgccgtgcgtggcgggcgggcgtctg
gcggtacaattgcagctcttgtccccggcgcgacgaccggttgccgttacccaggatctg
cgcagtttctgggaggagggctaccccgaggtcaagcgggaactggcggggcgctacccg
aagcatccctggcccgcggatccctggaaggctgtgccgacccgttctacaaaaaaagcc
atgccctga
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