Syntrophotalea acetylenica: A6070_03095
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Entry
A6070_03095 CDS
T04585
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pace
Syntrophotalea acetylenica
Pathway
pace03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pace00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A6070_03095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pace03019
]
A6070_03095
Enzymes [BR:
pace01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A6070_03095
Messenger RNA biogenesis [BR:
pace03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A6070_03095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_19
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
APG43232
UniProt:
A0A1L3GGU3
LinkDB
All DBs
Position
670320..671609
Genome browser
AA seq
429 aa
AA seq
DB search
MEFSTFDFHPQIRQGITAAGYVSPTPIQAQAIPPILAGQDVMGLAQTGTGKTAAFALPVL
QRLMKSRGGRVRALVVAPTRELAEQIHQAFCSLGAHTGLKSLTVYGGVSIRPQITALKRG
VDIVVACPGRLLDHIENKHIDLSAVEALVLDEADQMFDMGFFPAIRRILGHLPKRRQTLL
FSATMPDEIRRLSGEILATPITVRIGNTAPAETVTHALYPVAQQQKTAMLLELLGAGDMG
SVLVFTRTKHRAKRLGLQLDKAGFQACSLQGNLSQARRQEALEGFRKGKYRILVATDIAA
RGIDVSRVSHVINYDMPATAETYVHRIGRTGRASRQGEAFTLVSGEDTAMIRAIEKMLKA
PLERRTVQGFAYEDPAVSDAPPVKANPGASRQPRSKRPVGRGAAPKRNRNYAGTSRDASS
GVRGRRNAD
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atggaattcagtacattcgattttcacccgcagattcgccagggcatcactgccgccggt
tatgtttcgcccactcccatccaggcacaggccattccgcccattcttgccgggcaggat
gtcatggggctggcccagaccggcacagggaaaaccgctgcgtttgccctgccggtactg
cagcgcctcatgaagtcgcgcggtggccgggtgcgggcgctggtagtggcgcctacgcgc
gaactggcggaacagattcatcaggccttttgcagccttggcgcccatacgggacttaaa
agcctgactgtttacggcggcgtgagcatccggccgcagatcaccgcgctcaaacgaggt
gtcgatatcgtggtggcttgcccggggcggctgctcgatcatattgaaaacaagcacatc
gatctgtccgctgttgaagctctggtgctcgacgaagccgatcagatgttcgacatgggg
tttttccctgccatccggcgtattctgggccacctgccgaaacggcgccagaccctgttg
ttttccgccaccatgccggatgaaatccggcgcctgtccggtgaaattctggcgacgccg
ataacggtgcggataggaaataccgcgccggccgaaactgtcacccatgccttgtatcct
gttgcccagcagcagaaaaccgccatgttgctggaacttctcggagccggcgacatgggg
tcggtgcttgtatttacccgaaccaagcatcgcgccaagcggttgggcctgcaactcgat
aaagcaggattccaggcctgctccctgcaggggaacctctcccaggcgcgccgtcaggaa
gcgcttgagggattccggaagggtaaataccggattctggtcgcgacggatatcgcagcg
cggggcatcgatgtgtctcgtgtttcccatgttataaattacgacatgcccgctaccgct
gaaacctacgtgcatcgcatcggtcgtaccggccgggcttcgcgccagggcgaagctttt
accctggtctccggcgaggataccgccatgatccgggccattgaaaagatgctgaaagct
ccgctggagcggcgcactgtccagggatttgcctacgaggacccggctgtatccgatgcg
ccgcctgtcaaagcaaaccctggggccagtcggcaaccccggagcaaacgccccgttggg
cgcggtgcggcgcccaaacggaacagaaattatgccgggacttccagggacgccagttcc
ggcgtcagggggcggcgcaacgctgattga
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