Cutibacterium acnes HL096PA1: PAGK_1124
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Entry
PAGK_1124 CDS
T02638
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pach
Cutibacterium acnes HL096PA1
Brite
KEGG Orthology (KO) [BR:
pach00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pach03019
]
PAGK_1124
Enzymes [BR:
pach01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PAGK_1124
Messenger RNA biogenesis [BR:
pach03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PAGK_1124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
FtsK_SpoIIIE
HA2_N
AAA_30
NACHT
nSTAND3
AAA_23
T2SSE
Ploopntkinase3
TsaE
ResIII
PhoH
SLFN-g3_helicase
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AGJ79965
LinkDB
All DBs
Position
complement(1256187..1260272)
Genome browser
AA seq
1361 aa
AA seq
DB search
MPNSRLEGELPGGGVVTFDTDLPIAAHADEIADLIKHHQVVVVAGETGSGKTTQLPKICL
ALGRRQIAHTQPRRIAARSVAERVAEEMGVELGEQVGYQVRFTRRASSDTALTVMTDGVL
LAEISHDRDLCAHDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIITSATIDTTRFS
AHFDDAPVIEVSGRTYPVEVRYRPLDPSEQIRPDDEDDIDDEDELLHRPSAPSLTSPDDE
VVDQVTGICRAVQELCREESGDILVFLAGEQEIRETAEALADLNLSNTEVLPLFARLSAA
EQHRVFTPHTGRRIVLATNVAETSLTVPGIRYVIDPGTARISRYSVRTKVQRLPIEPVSQ
ASANQRAGRCGRVAPGICIRLYSQTSFESRPEFTEPEILRTNLAAVILQMAQARLGAITD
FPFVEAPDRSRINDGIRLLDELGALKPGHRDAPRLTKIGHQLARVPLDPRLGRMLLEGAR
QGSLAEVLVIVAALSIRDVRERPADKREEADAFHRRFATEANLLQTLQAADNTDNNQVGD
WSQVRRQHIHQEAANTAKPGPPARHTPHTRGKISPRPQAGGIDEGGDIMAIHRLWRYLRH
QRRQMGSSAFRRMCRAEYINYLRVREWDDLHGQLRQIAKELHLEVNRTSAPTDRVLVALL
SGLLSHIGLVQVRQPAKRHGQRPGPQEYLGARGTKFAINPGSLLARKSPELVVAVELVET
SRLWARTVAAVQPEWVEEVAGPLIRRSWAVPHWAASTASVVATERGTLFGVPLWADRRVT
YGRIDPVASRQIFIRSALVERNWRSDHGFLKHNDRVRDEAADLEERSRQRDLVADDDAIF
AFYDRRIPDGIVSGSHFDAWWRRVQDRHQLDLSIDDLVDSGSVDADAFPDHWKVGNLELP
VRYVFEPGSGHDGVTVTIPLALLNQVPTAPFSWQVPGLRTELATELIRALPKRIRTQLVP
APDRARAALTWLEDHDADRHAPFTNELGRALRTLTGVIINPDDWNIAAIPAHLRIGFDIT
DAEGRPVGKKSKKNGKDKLKGSQPAPIARSEDLDALQTDLAPKVSQSLTKAAGQPQIHGA
KEWTFDPIPKRVDLSRKGPDAVGYPCLVDEGDSVGTTVLDTPRAQRTSHASGVVKLLVLN
LPDPTKWVVTHMDNATKLALATSPYPSVPALLADARHKAVASVAQEKAGDLSGIRDKKTF
DDLALVVRQDQADRMARVVRTAGRILSRVVAARQALATVSDPAIHADIVAQIDDLVFENF
ISATPDPWYDDMPRWIQGVSVRIESLMTNPSRDPRQMAELEPLLADYDALCEEQPAGKLP
AEVEEIGFMLEELRVQYFAQKLGTRVSVSPKRIRMAIAKLS
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atgcctaattcacgactggaaggtgagctgcctggtgggggagtcgtcaccttcgacact
gaccttccgatagcggcacacgccgacgagattgccgacctcatcaagcaccaccaagtc
gtggtggtggcaggcgagaccggttcgggaaagacgacccagctgcccaagatctgcctg
gccttgggacgtcgtcagattgcccatacccagccccgacggatcgccgcgcgcagcgtc
gcagaacgagttgccgaggaaatgggggtcgagctgggggaacaggtcggctatcaagtg
cgcttcacccggcgcgcttcctccgacaccgcactgactgtcatgactgacggagtactg
cttgctgagatttcccatgatcgcgacttgtgcgcccatgacaccatcattattgacgag
gctcacgagcgcagcctcaatatcgacttcttgctgggttacctgaaacagttgctgcca
cgacgtccagacctcaaagtcatcatcacctcggccactatcgacaccaccaggttttcc
gcccacttcgacgacgcgccagttattgaggtctcggggcgcacgtaccccgttgaggtg
cgttatcgcccgctggatccctctgagcaaatccgccccgatgacgaagatgacattgac
gacgaagatgagctcctccatcgtccatcagccccgtccctgacgagcccggatgacgag
gttgtcgaccaagtcaccggtatctgccgggcggtccaggaactttgccgcgaggagagc
ggtgacatcctggtattcctagctggtgagcaggagatccgcgagaccgccgaggcgctg
gcggacctcaatctgtctaacaccgaagtcctgccactctttgcccgcctgtcggccgca
gaacagcatcgggttttcactccgcataccggacgacggatcgtgctggccaccaacgtc
gccgagacctccctgaccgtgcctggaatccgctacgtcattgatccgggaactgcccgt
atctcgcggtactcggtgcgcaccaaggtccagcgcctgcctatcgagccggtctcccag
gccagcgccaaccagcgcgccggacgatgtggccgcgtggcaccgggcatctgcatccgg
ctgtattcccagaccagtttcgagtctcgtcccgaattcaccgagccggagatcctgcgc
accaatttagccgcggtcatcctccagatggcccaggccaggctcggagccatcaccgac
tttcctttcgtcgaagccccggaccgctcccggatcaatgacggaatccggctcctcgac
gaactaggagctctcaaaccgggacaccgtgacgctccgcgcctaacaaagatcggacac
cagctggcccgggtgccattggacccacggctgggacgtatgctccttgaaggagcgagg
caaggtagcctggccgaggtcttggtcatcgtcgcggctctatcgattcgcgacgtccgg
gagcgtcccgcagacaagcgcgaggaggccgacgcttttcatcgccgttttgccaccgaa
gccaacctactgcagaccctccaagcggccgacaacaccgataacaaccaggtgggggat
tggtctcaggtccgccgccagcatattcaccaggaggccgccaacactgctaaaccagga
cctccggcacgtcataccccgcacaccagggggaagatctccccacgcccccaggcgggc
ggcattgacgagggtggcgacatcatggccatccaccggctatggcgttacctgcgccac
cagcgtcgtcaaatggggtcctcagccttccgccgaatgtgtcgggccgagtacatcaac
tatctgcgggtgcgtgagtgggacgatttgcacggccaactccgccagatcgccaaggaa
ctgcacctggaggtcaaccgcacctcagccccaaccgaccgggttcttgttgccctactc
tcgggactgttgtctcacatcgggctggtccaggtccggcagccggccaaacggcacggc
cagcgccccgggcctcaggaatacctcggtgctcgcggcacgaagttcgccattaatccc
ggatcgctgctggcgcgtaagtcgcccgaacttgtcgtggctgttgagctcgtggagacc
tctcggctgtgggccaggacagttgccgccgtccagcccgagtgggtggaggaggttgcg
ggccctctcatcaggcgttcctgggcggttccgcattgggcagcatcaacagcgtcagtg
gtcgctactgagcgtggcaccctctttggggtgccgttatgggctgaccgtcgcgtcacc
tatggccgcatcgatccggtggcgtcccgacagatttttatccgttcggctctcgtagag
cggaactggcgatccgatcatggattcctcaaacacaacgatcgagttcgcgacgaggcc
gcagatcttgaggagcgcagtcgtcagcgcgacctggtagccgacgacgacgccatcttc
gctttttacgaccgtcggattcctgacgggatcgtctctggttcccatttcgacgcttgg
tggcgtcgggtgcaagaccgtcaccagcttgacttgtcgatcgacgatctcgtcgactcc
ggctccgtagacgccgacgctttccctgaccactggaaagtcggaaacctcgaacttcca
gtgcgctacgtttttgagccgggatccgggcacgacggcgtcaccgtcactatcccgcta
gcactgctcaaccaggtgcccacagcaccgttcagctggcaggtgccaggcttgcgcacc
gagttggcgacggaactcattcgcgcccttcctaagcgcattcgcactcaactggtacct
gcccccgaccgtgcccgagcggcgctaacctggctggaagaccacgatgctgaccgccac
gcccccttcaccaatgaactcggacgagccctgagaactctcaccggggtcatcatcaac
cctgatgactggaatattgccgctatcccggcccatttgcggattggtttcgacattact
gacgccgagggaagacctgtcggtaagaaatccaaaaagaatggtaaggacaaactcaag
ggatctcagcccgcacccattgcccgctccgaggatctcgacgccctgcagactgatttg
gctcccaaggtgtcccaatctttgactaaggccgcgggccaaccccagatccacggtgcg
aaggagtggaccttcgacccaattccgaaacgggttgatctgtcgcgcaagggccctgac
gccgtcggctacccatgcctggtcgatgaaggtgactccgtcggcaccaccgtcctcgac
actcctcgtgcccagcgcaccagccatgcttccggcgtcgtgaagttgcttgtcctcaac
cttcctgacccgacgaagtgggttgttacgcatatggataacgccaccaagctggccctg
gcaacgtctccgtaccccagcgtcccagccttactggccgatgcccgtcataaggcggtg
gcttcggtggctcaggagaaggcgggtgatctgtcagggattcgcgacaagaagacattc
gacgacctcgctctagtcgttcgtcaagaccaggccgaccggatggctcgagtggtgcgt
actgctggcaggatcctcagtcgtgtcgtcgctgctcgtcaggctctggcaactgtctcg
gatccggcgatccatgctgacatcgttgctcagattgatgacctcgtcttcgagaatttc
atttcggccaccccggacccttggtatgacgacatgccgcgctggattcagggggtgagc
gtgcggatcgagtccctgatgaccaacccttcacgcgatccccgccagatggccgagctg
gagcctctcctggccgactatgacgccctgtgcgaggagcaaccggctggaaaactaccc
gccgaggtcgaggagattgggttcatgctggaggagttgcgcgtccagtacttcgctcaa
aaactcggtactcgtgtcagtgtgtcacccaagcgaattcgtatggcgatagccaagctg
tcctaa
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