Pediococcus acidilactici: A4V11_02290
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Entry
A4V11_02290 CDS
T04512
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
paci
Pediococcus acidilactici
Pathway
paci03030
DNA replication
paci03430
Mismatch repair
paci03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
paci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A4V11_02290
03430 Mismatch repair
A4V11_02290
03440 Homologous recombination
A4V11_02290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paci03032
]
A4V11_02290
03400 DNA repair and recombination proteins [BR:
paci03400
]
A4V11_02290
Enzymes [BR:
paci01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
A4V11_02290
DNA replication proteins [BR:
paci03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
A4V11_02290
DNA repair and recombination proteins [BR:
paci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
A4V11_02290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
T2SSK
MLLE_2
Stn1
Motif
Other DBs
NCBI-ProteinID:
AOW73914
LinkDB
All DBs
Position
complement(479482..482817)
Genome browser
AA seq
1111 aa
AA seq
DB search
MAFVPLHVLSSYSLLTSPTKIAELVKTAKDRGYSAMALTDNNTMYGAIEFYQACLKNDLK
PIVGLTIWLDSTRGIDNQFALVLLAKNINGYHNLLRISSAKMTETSAKTTLTFNDLRAYW
KDLVVIVPPVRSEVNELLERGMANDAQALIEEYQQSIDSPDLFLGINGQQSHVMRQTLTQ
MAQKAGIGCLPLPSVEYLNEDDHFATQVLRDIDSGKVLQHPELLAKGGGNNWLKPATEFV
REYGQLGDAEMLTQLDRVVAGINLEIPIVSPRLPQFATPNQQDSFTYLTQLCQQALTQLK
ENVPDAERYQARLDHELAVIKEMGFADYFLIIHDVVQFAHQKQILTGPGRGSAAGSLVAY
LLKITSVDPLQYGLLFERFLNPERAQMPDIDLDIPDDQREVVLQYVHDRYGHQHVGQIIT
FGTLAAKQAIRDVARVFGEMPNKINQISALIPNKLNITLKQAAQTSHRLRDFIESSPKNR
FMFETACRLEGLPRHFSTHAAGIVLSQDELVESVPVQDGNEGMLMSQYSKNFVEQVGLLK
MDFLGLRNLSLMNNILELVHRIEPQFEIEKIDLNDPQTLQLFQRGDTSGVFQFESTGIRN
VLRKVHPTNFGLVVAVNALYRPGPMENIDRFVKRKDYLEPYRFPNQILERVLGETYGILV
YQEQVMEVASAMGGLSLGQADLLRRAMSKKKHAVIEQMRTNFIQGAVQKGYSEKIAQQVY
RYIENFANYGFNKSHAVAYSKLAFQLAYLKAHYPGDFYTALLNSVVGNDTKTKTYIQELK
RLGIPTLAPDINQSSATYTYQNGQIRMGFTAIKGLRRDFIQHLLAERERGGQFKTVDDWL
RRMGNQGIDEDVIDKLIFAGALDSFGYNRAELDEYLPELLKGITFSGQNVDLFQKLMPTI
KSRPDLPLDEKLDREEELLGTYVSAHPVERFAELIKQRRFVPIQQFKAGEKVTSIVYIRS
IRSIRTKKGEPMAFAKISDQTDECEAVIFPRVYQATQLLESKRVLQLTGKVEQREDQLQL
IVDQIEAPRQIAHGQTHWLIKVPSRKNPADFQKRLFGMFKEYHGKVPVTLVYRDTNQQRA
LSEKFSLQGTPEVKKAFENLLGTDQISLVEK
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atggcttttgtaccgctacatgtcttaagttcgtatagtttgttgacgagcccaacaaaa
atcgctgagctggttaaaactgccaaagatcgtggttattccgcgatggccctcactgat
aataatacgatgtatggcgcgattgaattttatcaagcctgtttgaagaatgatttaaaa
ccgatcgttgggttgaccatttggttagatagtacccggggcatcgacaatcagtttgcg
ttggtgttgctagctaaaaacattaacgggtatcacaatctactacggattagttctgcc
aaaatgacggaaacctccgcaaaaacaacacttacgtttaatgatttacgagcttattgg
aaagatttagtggtgatcgtgcccccagtacgttccgaagttaatgaattattggagcgg
ggaatggctaacgatgcccaagcactaatcgaagaatatcaacaatcaattgactcccca
gatttatttttaggaattaatgggcagcagtctcacgtcatgcgccaaacactgacccag
atggcgcagaaagcagggattggttgtttaccgcttcccagcgttgaatatttaaatgaa
gatgatcacttcgcaacccaggtgctgcgcgacattgattcgggaaaagttttgcagcat
ccggaacttttagcaaagggcggcggtaacaactggctgaagcccgcgactgaatttgtt
cgcgaatacggtcagttgggtgatgccgaaatgctaacccagctggatagggtggttgct
ggaattaaccttgaaattccaatcgtaagtccgcgtctaccacagtttgcaacccctaac
cagcaggattcattcacttatttgacccaactatgtcagcaagcattaacccagttgaag
gaaaatgttccggacgcagaacgttatcaagcacggttagatcatgaattagccgtgatt
aaagaaatgggctttgcggattactttttaattattcacgatgtggttcaatttgcacac
caaaagcaaattttaactggtccaggtcgcggatctgcggccggttctttagtagcttac
ctattgaaaattacgagtgtggatcctttgcaatacggacttttatttgaacgtttcttg
aatcccgaacgagcgcagatgcctgatattgatttagatatccctgatgatcagcgggaa
gtcgttttacaatatgtacacgaccgctatggtcaccaacacgtggggcagattattacg
tttggtactttagctgctaaacaggccattcgggacgttgcccgtgtatttggggaaatg
cctaataaaattaaccaaattagcgcactcattcctaataaattaaacatcacattaaaa
caagcagcccaaacctctcaccggttacgggattttattgaaagttcgccgaaaaatcgg
tttatgtttgagacagcgtgccggttagagggacttccccgacacttttcaacgcatgca
gcgggaattgttttaagtcaagacgaactggtggaaagcgtgccggttcaagatggtaac
gaagggatgctgatgagccagtattccaagaattttgttgagcaagttggcttattaaag
atggatttcttaggacttcgaaacctttctttaatgaataacattttagaactggtccac
cgtatcgaaccgcaatttgagattgaaaagattgatttaaacgatccgcaaactttacag
ttatttcagcggggggatactagcggagtttttcaattcgaatctacaggaatccgtaac
gttttgcgtaaagtacaccccacgaacttcggactcgttgttgcggttaacgccctctat
cggccgggaccaatggaaaatattgaccggtttgttaaacgaaaggattatttagaaccg
tatcggtttcctaaccaaattttggaacgggttttaggtgagacttatggaatcttggtt
tatcaagaacaggtaatggaagtggcctccgcgatggggggcttgagcctgggccaagcg
gacttgttgcgacgggcaatgagcaagaaaaagcatgccgtaattgagcaaatgcggacg
aattttattcagggtgctgttcaaaagggttatagtgaaaaaattgcccaacaggtgtac
cggtatatcgaaaactttgctaactatggatttaataaatcccacgcagttgcttacagt
aaactagcctttcagttggcgtaccttaaagcacactaccctggtgatttttatacggca
ttattaaattccgtggtgggcaatgatacgaaaactaagacttacattcaagaattaaag
cggttaggaattcctacgttagctccagatattaatcaaagtagcgcaacttatacctac
caaaatggtcaaatccgaatgggatttaccgcaattaaggggttacgccgcgactttatc
cagcatttattagcggaacgtgaacggggcggacaatttaagacggttgacgactggtta
cgccgaatgggcaatcaggggattgacgaagatgtaattgataaattaatttttgcgggg
gctttggacagctttggctataatcgggcggaactagacgaatatttacccgaactgctt
aaggggattacctttagcggtcaaaatgtggacctatttcaaaagctaatgccgacaatt
aaaagccgtcctgacctaccgcttgatgagaagttggatcgggaagaagaattacttgga
acttatgtttcagctcatccagtagaacggtttgcggaattaattaaacaacgccgtttt
gtcccaattcagcagtttaaagctggagaaaaggtaacttccatagtttatatccgcagc
attcgctcaattcgaacaaagaagggcgaacctatggcatttgctaaaatcagtgaccag
acggatgagtgtgaagcggtaatcttcccccgcgtttaccaagccacccaacttttagaa
agtaaacgagtactgcagttaacgggcaaagttgagcaacgggaggaccagctccagcta
attgttgatcagattgaagcgcctcgacaaattgcacatgggcaaacgcactggctaatt
aaagtacccagccgcaaaaatcccgctgatttccaaaagagattatttgggatgttcaaa
gagtaccatggtaaagttccggttaccttggtttaccgagataccaatcagcaacgagca
ctatccgaaaaatttagtttacaaggaacacccgaagtgaagaaagcgtttgaaaattta
cttggaacagatcaaatttcattggttgaaaaataa
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