Pediococcus acidilactici: A4V11_04025
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Entry
A4V11_04025 CDS
T04512
Name
(GenBank) 23S rRNA (uracil-5-)-methyltransferase RumA
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
paci
Pediococcus acidilactici
Brite
KEGG Orthology (KO) [BR:
paci00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
paci03009
]
A4V11_04025
Enzymes [BR:
paci01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
A4V11_04025
Ribosome biogenesis [BR:
paci03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
A4V11_04025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_15
Cons_hypoth95
Methyltransf_25
MTS
PrmA
TRM5-TYW2_MTfase
Methyltransf_11
RrnaAD
N6_N4_Mtase
Methyltransf_4
PCMT
DOT1
CMAS
Ubie_methyltran
UPF0020
Methyltransf_23
Methyltransf_12
Methyltransf_32
Nitrate_red_del
DREV
Motif
Other DBs
NCBI-ProteinID:
AOW74228
LinkDB
All DBs
Position
complement(838968..840341)
Genome browser
AA seq
457 aa
AA seq
DB search
MKIKAPVEKNQTYTVDITDLTYQGMGVAKIEHFPIFIADSIPGEQIQVKITKVQKNFAFG
RVEKVLVESPDRVAGNDATYTQTGIAPLQHIAYPAQLKFKQTQIKNLLQKSHLEQIEVAE
TVGMENPTGYRNKAQVPVRKVKGQLATGFFKRGSHDLVPIEDFYIQDPVIDQVILQVRDI
LREYQIEPYDEINQRGVVRNIMVRRGRRSGEIMVVLITRTSSVPYLDEIAAAIHQIDGVV
SVIQNINPKQTNVIMGKEDRLLAGESVIHDELLGQKFIISAHSFYQVNPVQTEKLYQLAI
EKAGLTGKETVLDVYSGIGTISLAMAQAAKKVYGVEIVKEAVQDAKVNAVQNQAKNVKFV
VGKAEDQMAKWQAEGMQPDVVVVDPPRKGLDESVIDATVVMAPKRVVYVSCNPATLVRDI
DRFQAQGYKVDQPITPVDQFPQTPHVESVTVLGRTEK
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattaaagcaccagtagaaaaaaaccaaacgtatacggtcgacattaccgactta
acttatcaaggaatgggcgtagctaaaatcgagcattttccaattttcattgccgacagt
atcccaggcgaacaaattcaagtcaaaatcactaaagtgcagaaaaattttgcgtttggc
cgggtggaaaaggttctagtggaaagcccagaccgggttgcgggaaacgatgctacgtat
acgcaaacgggaattgcaccgttgcaacacattgcgtaccccgcgcaattaaaatttaag
caaactcaaattaaaaacttattgcaaaagtcccacttggaacaaattgaagttgcggaa
acggtcgggatggaaaacccaacgggataccgaaataaagcgcaggttccggttcgaaaa
gttaagggacagttagccaccggctttttcaagcgcggctcgcatgatttagtaccgatc
gaagatttttacattcaagatccggtaattgaccaagtaatcctccaagttcgagacatt
ttacgcgaataccaaattgaaccttacgacgaaattaaccaacgcggcgtagtgcgcaat
atcatggttcgtcggggccggcgttcgggcgaaattatggtggtgttgatcacccgcacc
agctcagttccctatttagacgaaattgctgcagctattcatcaaattgatggggtagtt
agcgtaattcaaaatattaaccctaagcagactaacgttattatggggaaggaagatcgc
ctgttagctggtgaatcagttattcacgatgaattgttgggtcaaaaattcattatttca
gcacattccttctaccaagttaacccagtgcaaactgaaaagctttaccagctagcaatc
gaaaaagccggcttaactggtaaagaaacggtcttggacgtttatagtggaattggcacg
atttccctagcgatggcgcaagccgccaagaaagtttacggagtcgaaattgttaaggaa
gccgttcaggacgcgaaggttaacgctgtccaaaaccaagctaagaacgttaaatttgtg
gttggcaaggcggaagaccaaatggcgaagtggcaagctgaagggatgcaaccagatgtt
gtggtagtggatccaccacgcaaaggcctcgacgaaagtgtgattgacgcaactgtggta
atggctcctaaacgagtggtttacgtcagctgtaacccagcaacgctggttcgagacatc
gaccggttccaggctcaaggctacaaggtggatcaaccaatcacgccggtagaccagttc
ccgcagacgccgcatgttgaatccgtaaccgtccttgggcgcacagaaaagtag
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