Pediococcus acidilactici: A4V11_05180
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Entry
A4V11_05180 CDS
T04512
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
paci
Pediococcus acidilactici
Pathway
paci03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
paci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A4V11_05180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paci03400
]
A4V11_05180
Enzymes [BR:
paci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A4V11_05180
DNA repair and recombination proteins [BR:
paci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A4V11_05180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
SNF2-rel_dom
MFD_D3
CdvA
RecG_dom3_C
Cytochrom_B562
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AOW74431
LinkDB
All DBs
Position
complement(1044559..1048056)
Genome browser
AA seq
1165 aa
AA seq
DB search
MNIEKIFADTKAVVEVTSNLGAQTRQLVTGLLEPAKQLFLNALLQKQNQPILVVTDSLAH
AERLYNELAEGQLDLQAYWFPAEEIIAAEVATSSPNYRTARVRFLNALANQQRGIYVTSA
SGFRRMVPAAADVKQAQLEISVGEEYDPQQLVQQLVQLGYQRVEQVEKKSEFAVRGSIVD
IFPLNQDVPVRVDFFDVEVDSLRTFDQNNQRSIENITQTKILPATDLIVTEEQFHQGIAK
LQKQVQQARKRLDEDNQELLQQNIAEVTERWQKHQIIPEDVIYTKQLYAKPNSLLDYLAD
GVLVVDDYPRILDAELDIQKNEASWIVDQLKNNVLLDNDPLGLEIRQLIRQKKQPQIFLS
MFQKGMGRLKFDQLTEITTRAVQEFFGQMPVLKGEVERWMSRHATVLIFANSKERQSKIA
STLRDFEIESRTVQADRIVTGAVNIIGQSFSQGFEMPDAKMVVLTEKELFAKVRKKRPRQ
QHIENAERLKSYTELKPGDFVVHVNHGIGKYLGMTTMEVDGVHQDYLTIQYQGSGQLFIP
VTQLNLVQKYVAAEGKRPKINRLGGSDWAKTKQHVASKIEDIADDLIELYAKREAEKGFA
FPPDDDLQLQFENDFPYTETPDQLRSIKEVKEDMEKPRPMDRLLVGDVGYGKTEVALRAA
FKAIEGGKQVAILVPTTILAQQHFDTMNDRFGDYPITTAMLSRFQTNAQIKEALAGLKDG
TIDIVVGTHRLLSKDVQFKDLGLLVIDEEQRFGVKHKERIKALRSQVDVLTLTATPIPRT
LNMSMIGVRDLSVIETPPTNRYPIQTYVVEENAGIIREGIMREIRRDGQVFFLHNRVQDI
EKVVAQIEALVPEARVAYIHGQMTEKQLEDILFDFIEGEYDVLVTTTIIETGIDIPNANT
LFVENADHMGLSQLYQLRGRIGRSSRVAYAYFLYQRDRVLTELGEKRLEAIKDFTELGSG
FKIAMRDLSIRGAGNLLGKQQHGFIDSVGYDLYSQMLADAVKQKQGKKVPKRSDSEIDLE
IEAFLPSTYIEDSQQKIEFYKRLRQVDSTDGLMDVVDDLIDRFGEYPTEVANLIQITELK
LHADAAQVEKIERKNGNLFITLTPAASQRISGENVFAALSVTKLRATVAESNDKMHIKLV
IQPQMTQQDWFEQLMSYVKKLAEYL
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgaatattgaaaaaatttttgcagacaccaaggcagttgttgaggttactagcaattta
ggagcgcaaacccgtcaattagtgaccggtttattagaaccggccaaacaactgtttttg
aatgcgttattacagaaacaaaatcaaccaattttagtggtaacggatagcttggcacac
gcggaacgactgtataacgagttagcagaagggcaactggacttacaggcctactggttt
ccggcagaagagattatcgcggcagaggtggcgaccagttcgcccaactaccggacggca
cgggtacgttttttaaacgccctcgctaatcagcaacggggaatttatgttacctctgct
tctggttttcggcgaatggtcccggcggccgcagacgttaagcaggcccagctagaaatt
agcgtgggggaagaatacgacccgcaacagctagttcaacagctagtccaactgggatac
caacgggtcgaacaggtagaaaagaaatcggaatttgccgttcgcggttcaatcgtggat
atttttccgcttaaccaggacgttccagtgcgcgtagacttttttgacgttgaggtagat
tcacttcgaactttcgaccaaaataaccaacgcagtatcgaaaatattacccagactaaa
atcttaccggcgacggatctgattgtgactgaagaacaattccatcaaggaatcgctaag
ttacaaaaacaagttcagcaagcgcgtaaacggctggatgaagataaccaagaactttta
cagcaaaacattgcggaagttacggaacgctggcaaaagcaccagattatcccagaagac
gttatctacactaagcaactctacgcaaagcctaattcgctgctcgattatttagctgac
ggggtgctcgtggttgacgactacccgcggattttggatgcggagttagatattcaaaaa
aatgaggctagttggattgtcgaccagttaaagaacaacgttttgttagacaatgatccg
ttaggcttagaaatccgccaattaatccggcaaaaaaagcagccccaaatctttttatcg
atgtttcagaaggggatgggccggcttaagtttgaccaactaacggaaattactaccaga
gcggtccaggaattctttggccaaatgcccgttttaaagggcgaagtggaacggtggatg
agccggcacgccaccgtcttgatttttgccaattctaaagagcggcaaagtaaaattgcc
agcacgttgcgtgattttgaaatcgaatcacgaaccgtgcaagcagatcggatagttacc
ggggcggtcaacattattgggcaatccttttcacaagggtttgaaatgcccgacgccaaa
atggtggtgcttactgaaaaggaactgtttgccaaagttcgcaaaaagcggccgcgccaa
cagcacattgaaaatgcggaacggttaaaaagttataccgagttaaagcccggagatttt
gtggtgcacgtcaatcacgggattggtaaatacttgggaatgaccaccatggaagttgat
ggagttcaccaagattaccttaccatccaataccagggcagcggacagcttttcattccg
gttacccagcttaatttagttcaaaaatacgtggcggcggaaggcaagcgcccgaagatc
aaccggctgggcggatctgactgggctaagactaagcaacacgttgcttctaaaattgaa
gacattgcggatgatttaattgaactatatgccaaacgggaggccgaaaaggggtttgcc
tttccaccggatgacgatctgcaattacaatttgaaaatgactttccttacaccgaaact
cctgaccaattgcggtccataaaggaagttaaggaagacatggaaaagccccggccaatg
gaccgactgctagttggcgacgtgggttatgggaagaccgaagttgccctgcgagctgct
tttaaggcgattgaaggtggcaagcaggtggcgattctcgtgccgacgacaattttagct
caacaacatttcgacacgatgaacgaccgttttggagattatccaattacgaccgcgatg
ctgtcccgttttcaaactaacgcgcaaattaaggaagctttagcagggttgaaagacggc
accattgacatcgtagtgggcactcaccgactgctatcaaaggacgttcaatttaaggat
ttaggcctgttagtgattgatgaggaacaacgcttcggggtgaaacataaagaacggatt
aaagctttgcgttctcaagtggacgtcctcaccctcactgctaccccaattccccgcacg
ttgaacatgtcaatgattggggtacgcgatctttcagtaattgaaactccgccaaccaac
cgttacccgattcaaacctacgtggttgaagaaaatgccgggattatccgcgaaggaatt
atgcgtgaaatccggcgggacggccaggtattcttcttgcataatcgggtgcaagacatt
gaaaaggtggttgcccaaattgaggcattggttcccgaagcacgggttgcctacattcac
ggtcaaatgaccgaaaaacaattagaagatattttgtttgatttcattgagggtgaatac
gacgtgctggtaacgaccacgattattgaaaccggcatcgacattcccaacgccaatacc
ctatttgtagaaaacgctgatcacatgggcctttcccaactttatcaactgcggggacga
atcgggcgctcctctcgagttgcgtacgcgtacttcctttaccaaagggaccgggtcttg
actgagttgggggaaaaacgtctggaagccattaaagacttcaccgaattgggatccggc
tttaaaatcgctatgcgagacctttcgattcggggtgcgggtaacttacttggtaaacag
caacacgggttcattgattcggttgggtacgacttgtattcgcaaatgctggctgatgca
gttaagcaaaagcagggcaagaaggttcctaaacgttctgatagtgaaattgatttggaa
atcgaagcctttcttccaagtacgtacattgaagactcacagcaaaaaattgaattttac
aaacgactccggcaagttgattccactgatggcttgatggacgtggtggatgatttgatt
gaccggtttggcgaatacccaaccgaagttgccaacttgattcaaattaccgagcttaaa
ttacacgcggatgctgcgcaggtagaaaaaatcgagcggaaaaatggcaacttgttcatt
accttaactccggcggcaagccagcggatcagcggcgaaaacgtctttgccgcgctatcg
gttactaaactgcgagcgacagtggcggaatcaaatgataaaatgcatataaagttagtt
attcaaccacaaatgacgcaacaagattggtttgagcaactaatgagctacgttaaaaaa
ttagctgaatatctgtga
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