Pediococcus acidilactici: A4V11_06785
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Entry
A4V11_06785 CDS
T04512
Name
(GenBank) helicase-exonuclease AddAB subunit AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
paci
Pediococcus acidilactici
Brite
KEGG Orthology (KO) [BR:
paci00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paci03400
]
A4V11_06785
Enzymes [BR:
paci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A4V11_06785
DNA repair and recombination proteins [BR:
paci03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
A4V11_06785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DEAD
AAA_30
AAA_12
ResIII
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AOW74734
LinkDB
All DBs
Position
complement(1388628..1392344)
Genome browser
AA seq
1238 aa
AA seq
DB search
MATRTYTPSQQQAIDSSGHNILVSASAGSGKTSVLVERVIQKIINGEDVDRLLVVTFTEA
AAAEMKERIRAAIMKKISEVKDADLQNHLSLQLGKLNNANISTLHAFCMAVIRNYYYVID
LDPAFRIMDPTESELLKEQVWADLREELYESDEDGQFARLTRNFSNDRSDAGLQELMLDL
FEFANANPDPEAWLTKIANNYEVQTDQVMEMDFVKQILAKIKTQLIQIYQTDLNLTERAI
NGGEPLQKAAANFQAEVAGLKTVIDQFDQPNWDALQQAMVNFKFAQLPRGKKPEVQEFNL
EAKPLRNEFKAEFNGLVERYFKLKNDQLIAIFKDARELMLKLIEVQQQFSDRFLQEKLTR
RSLDFSDLEHFALQILQNQSEEGQAVRRNFQEKFNEVIVDEYQDINPLQETILTAVARED
PGNMFMVGDVKQSIYAFRMADPSLFISKSRRFKQSGQPDERIILAENFRSMQNVDDFTNL
IFNQIMDQAVGEIAYDADAQLMFGAKYYPAEVQNDTEVLLFDDQQNENTADQEPGAIITD
KNDGQLQMIAQRIKRLFADQTEVFDRDTQEMRPLKYSDIALLHSTGNNNLNIVDTFKKYG
IPIEVSNAQDYFQTTEVSIMMALLKIIDNPYQDIPLAAVLRSPIVGLDENELAFLRISKK
NGHYFESVLYFQNEFKIDYQNEFQANLKRKIDQFLDQLQHFRKLSQQCTLVDLLWEIYQE
TGYLDYVGGMPDGPQRQNNLHALYDRAQSYEESSFKGLFQFVRFVEKMREKNKDLAENPV
VTDTEAVKLMTIHSSKGLEFPIVFLIDADHGFNNSDTKGRYVLDRDAGMGITVKDFVHRL
EVDTMQKNWIIDVRQRKMLAEELRVLYVALTRAQQKLIVTGALKAATPTLEKWAQAADTG
ELLLPEAERGKAKNFLDWIGMAIMRVPSVTEDYPDVSSRKLDSAAGVEVKLKVVNRADLL
TGQRSDTGIEQGPPPTLEKVDVNSDINDAEQIRAILNFKYHDIEATQTTAYQSVSEIKRV
FDDPDKLEMDFSAVDRDQKIRPQKRFVTDQLMTPRFMSEVSQPKPTEIGTATHLILQQLD
LREPVTEAVIKDKIRELVMNQVLEEAVAKRIRINSILDFFESELGQLMLAHPEQVHREEA
FSLLLPAKGLFPNVVGNQDVLIHGIIDAYFELDGRVILLDYKTDFVLPGSPQQGIQKVID
RYQGQVNLYAQALSNILGKPVNEKYLYLLSIGKLVEIQ
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atggcaactagaacttacacgcctagtcaacaacaagcaattgatagttcggggcataat
attttagtttcggcctccgctggatcgggaaagacctcggttttagttgaacgggtaatt
caaaagattatcaacggagaagacgtggatcgtctcctggtcgtgaccttcactgaagca
gctgctgctgaaatgaaggaacggatccgagcggcaattatgaaaaaaattagtgaggtt
aaggatgctgacttacaaaaccacctttcgttacagctcggcaagttaaataacgctaat
attagtactttgcacgctttctgtatggcggtgatccgcaactactactacgtaatcgac
ttagatccagcctttcgcatcatggatcctacggaaagcgagttattgaaggaacaggtg
tgggccgacttacgggaggaactgtacgaaagtgatgaggatggccaatttgcacgctta
acgcgcaatttttctaacgaccgttcggatgctggtctccaggagttaatgttggacttg
ttcgaatttgcgaacgccaacccggatcctgaagcgtggctaactaaaattgccaataat
tatgaagtacaaactgatcaggtaatggaaatggattttgtgaaacaaatcctcgcaaag
ataaaaacgcagctgattcaaatttatcaaacggaccttaaccttaccgaacgtgcaatt
aacggtggcgagcctttgcaaaaagcggccgctaatttccaagcggaagtagccggttta
aaaaccgtgattgatcaatttgatcagcctaactgggatgccttgcaacaggcaatggtt
aactttaagtttgctcagctaccgcgtgggaaaaagcctgaagttcaagagtttaattta
gaagctaagccgttacgcaacgaatttaaagctgaatttaacggattagtagagcgttac
tttaaactaaaaaatgaccagttaatcgccatttttaaggacgcgcgggagttaatgctg
aagttaattgaagttcagcagcaattttccgaccgctttttacaggaaaagctaacgcgg
cgttccctggattttagtgacctagagcactttgcgttacaaattttgcaaaaccagtcc
gaagagggtcaggcagttcggcggaatttccaggagaaatttaacgaagtaattgtcgat
gaataccaagatattaacccgcttcaggagaccattttgacggcggtggctcgtgaagat
cctggaaacatgttcatggtgggggacgttaaacagtcaatttacgccttccgaatggca
gaccccagcttattcattagtaaaagccggcgatttaaacaatctgggcaaccagacgaa
cggattattctggcggaaaatttccgttctatgcaaaacgttgatgattttaccaacttg
atttttaaccaaatcatggatcaggcggtgggagaaattgcctacgacgcggatgcacag
ctgatgttcggcgcgaaatattaccccgctgaagttcagaatgacacggaagttctatta
tttgacgatcagcaaaacgaaaatacggctgaccaagaacctggggcgataatcaccgat
aaaaacgacgggcagttgcaaatgatagcgcaacgaattaagcggctatttgcggatcaa
accgaagttttcgatcgggatacgcaggaaatgcggcctttgaaatatagtgatattgca
ttgctgcattcgacggggaataacaatcttaacatcgtggacaccttcaaaaagtacggt
atcccaattgaagttagcaatgcccaagactatttccaaacgaccgaagtttcgatcatg
atggccctcttgaagattattgataatccgtaccaggacatcccattagcggccgttttg
cgttcgccaattgttggccttgatgaaaacgagctggcctttttgcggatttctaagaag
aacgggcattattttgagtcggtattgtatttccaaaatgagtttaaaattgattaccaa
aatgaatttcaagccaacttaaaacgtaaaattgaccagttcttagaccaattacagcat
tttcggaagctttcccaacaatgtacgctggtagatttgctttgggagatttaccaagag
accgggtacttggattacgttggcgggatgccggacggaccgcaacggcaaaataacctt
catgctttatatgaccgggcccagagctatgaagagtccagttttaaagggttatttcaa
ttcgtgcgttttgtagagaaaatgcgcgaaaagaataaagatttggcagaaaatccggta
gttaccgatacggaagccgtaaaattaatgaccatccatagtagtaagggattagagttt
ccaatcgtgttcctgatcgatgcggatcacgggtttaataatagcgacactaagggccgc
tacgtgttggatcgtgatgcggggatgggaattaccgtgaaggactttgtgcaccgctta
gaagtcgacacgatgcaaaaaaactggattattgacgtacggcaacgtaaaatgctcgcc
gaagagctccgggtgctctacgttgctctaacccgtgcacaacaaaagttaattgttact
ggagcgctaaaggctgctaccccaacgctagaaaagtgggctcaggcagctgacacgggc
gagctgctgttgccggaagctgagcggggaaaggcgaaaaactttcttgattggattgga
atggcgattatgcgggtgccctccgttacggaagattatcccgatgttagttcacgaaaa
ttggactctgccgcgggagttgaagttaaattgaaggtcgttaaccgcgctgatttactg
actgggcagcgttctgacacgggaattgagcaaggaccgccaccaacgttagaaaaagtg
gacgtgaatagcgacattaacgatgcagaacaaattcgggcgattctgaacttcaaatat
cacgatattgaagcaacccaaacgacggcctaccagtccgtatcggaaattaaacgggtt
tttgacgatccggacaaattagagatggactttagtgcggtcgaccgtgaccaaaaaatt
cgtccgcagaaacgatttgtcaccgatcaattgatgacgccccgctttatgagcgaagtt
agccaacctaaaccaactgagattggaacggcgacccacttgattttgcagcagcttgat
ttgcgagaaccggttactgaggcagtaatcaaggataaaattcgtgaattagtaatgaat
caggtattagaagaagccgtagcgaagcgaattcgaatcaacagcatcttagacttcttc
gaaagtgaactaggacaattaatgttggctcatcctgaacaagtgcaccgtgaagaggcg
ttctcattgctgttgccggcaaaagggctatttcctaatgtagttggcaatcaggacgtt
ttaattcacggaattattgatgcgtacttcgaattagatggccgagtaattctgctggac
tacaaaactgactttgtacttccaggcagcccgcagcaagggattcaaaaagtgattgat
cggtaccagggtcaggttaacctatatgcgcaagcattaagtaatattctgggtaaacca
gttaacgaaaagtacctgtatttattgtcaattgggaagctagtagaaattcaataa
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