Pediococcus acidilactici: A4V11_07860
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Entry
A4V11_07860 CDS
T04512
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
paci
Pediococcus acidilactici
Pathway
paci03420
Nucleotide excision repair
paci03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
paci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A4V11_07860
03430 Mismatch repair
A4V11_07860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paci03400
]
A4V11_07860
Enzymes [BR:
paci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A4V11_07860
DNA repair and recombination proteins [BR:
paci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A4V11_07860
MMR (mismatch excision repair)
Other MMR factors
A4V11_07860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C_2
AAA_19
Viral_helicase1
UvrD_C
AAA_30
SLFN-g3_helicase
AAA_16
AAA_22
NACHT
DUF5889
POTRA
Not3
DUF3683
Motif
Other DBs
NCBI-ProteinID:
AOW74935
LinkDB
All DBs
Position
complement(1637010..1639295)
Genome browser
AA seq
761 aa
AA seq
DB search
MDEQQQEQQRVDFVVDQIGAQKKRTEDLYEKAHHETSKVEKNYSQNAKVNLIEADDRIET
EAEIQQQKGLVARAVENEAILKRQINSLTELQDSPYFGRIDIQDPDETAPESLYIGVASF
ADQDGDFLIYDWRAPISSIYYNGTLGKVKYETPAGPMETELTKKRQFTISHGEITHMFDT
NETVGDELLQQALGEQNDEYMRNIVATIQKEQNDIIRDVHSDLLVVQGVAGSGKTSAILQ
RIAFLLYHSRASLDADEIVLFSPNKLYSRYISDVLPSLGERNMRQLTLAEFLNRRLEGLN
VQSLFDRFENQVSQTAEEQRIISFKESQRYIELIQQYEAQLTPENIKFTDINYQGAPFFK
KEQIREIFASFPASMSNRERILRTKNQLVKLLKARIDQEVSADWVQTQLDQISDEKYHEI
VGRRHFNSFDEENYFIGRHLVTKAFEIIDDAIFNNYFIDIYAQYADFLKQLPSSEIDGAA
AATTFNNDIELHHVRLEDAAPLMMLRDLITGSGTNRKFQYVFIDEMQDYSVAQLMYLKHA
FPKAKFTLLGDSEQALFKDVTEPAVLLEKLKDAFAVHRANLITLNRSYRSTAEITKFAAA
LLPDGDKIQPFSRHGKLPEITVTDTPSEAITAVKQICQAELQDYGTVAILTKNMQESTQV
AEWLHDLKPSLLTDGDRSLPKGIVVLPIYLAKGLEFDSVIAYDVSEQNYSEKLWRGTLYT
IASRAMHHLNLVSIGKVSEIITQMKEEGFSIKRVWKSSGKL
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
gtggacgagcaacagcaagaacaacaacgcgtcgatttcgtagttgaccagattggcgcc
cagaaaaagcggacggaagacctgtacgaaaaggcccatcacgaaactagcaaggtagaa
aagaactattcgcaaaacgctaaggtcaacttgattgaagccgacgaccggattgaaacg
gaagcggaaatccagcagcaaaaaggtttggttgcccgggcagtggaaaacgaagccatt
ttaaaacgacaaatcaactccttaactgaattacaggattcgccttactttggacgcatt
gacattcaagaccctgacgaaaccgcgccggaatcactatacatcggcgtggcctccttt
gccgaccaagacggcgactttttaatttacgactggcgggcgcccatttccagtatttat
tacaacggaaccctcggaaaggtcaaatacgaaactccggcgggccccatggaaaccgaa
ttaactaagaaacgacagtttaccatcagccacggcgaaatcacccacatgttcgatact
aacgaaacggtcggtgacgaactattgcagcaggcgctcggtgagcaaaatgacgaatac
atgcgcaacatcgtggccaccattcaaaaggaacaaaacgacatcattcgggacgttcac
agcgacctgctcgttgttcaaggggtcgccggtagcgggaagacttccgcgatcctgcaa
cgcattgcctttttgctttatcatagccgggcttcccttgacgcagacgaaattgttctg
ttctcgcctaacaaactgtacagtcgttacatctccgacgtgttgcctagcttaggggaa
cgtaacatgcgccagcttaccctggccgaatttcttaaccggcgtttggaaggactcaac
gtccaaagcctgtttgaccgtttcgaaaatcaggttagccaaaccgcggaagaacagcgg
attatttcatttaaggaaagccaacggtacattgagttaattcagcaatatgaagcccaa
ctcaccccggaaaatattaaattcaccgacatcaattatcaaggagcgcctttctttaaa
aaggagcagattcgcgaaatttttgcgagtttccctgcatccatgagcaaccgcgaacgg
attttacgaactaaaaaccaactagttaagttattaaaggcccggattgatcaagaggtt
tctgcggactgggtgcaaacccagctcgaccaaattagtgacgaaaaataccacgaaatt
gtgggacgtcgccactttaactcctttgatgaagaaaattatttcattggccgtcactta
gttactaaggcttttgaaattatcgacgatgccatttttaataactactttattgatatt
tacgcccagtacgcggatttcttaaagcagctgccatcttcggaaattgatggcgccgcg
gcagccaccaccttcaataacgacattgaattgcaccacgtgcgtttagaagatgccgct
ccgttaatgatgttgcgggacttgattaccggaagcggcaccaatcgcaagtttcagtac
gtcttcatcgatgaaatgcaagactattcggttgcccagttaatgtacctcaagcacgcc
tttccgaaggccaagtttacgttgttgggcgatagtgaacaagctttgttcaaggatgtt
accgaaccggccgtgttacttgaaaagcttaaggacgcgtttgccgttcaccgggccaac
ttgatcacccttaaccgcagctaccgatccaccgcggaaatcactaaatttgcggcggct
ctactacccgacggtgataagattcaaccctttagtcggcacggtaagttacccgaaatt
acggttacggataccccttccgaggccattaccgcagtgaaacaaatttgccaagccgaa
ttgcaagattacgggaccgtcgccatcctgaccaaaaacatgcaggaaagtactcaagtt
gcagaatggttgcatgacttaaaacctagcctgctaaccgacggtgaccgctcgttgcct
aagggaatcgttgtattacccatttacttggcgaaggggttggaatttgattcggtaatt
gcctacgacgtttcggaacagaattattccgaaaaattgtggcggggcaccctgtatacg
attgcttccagagccatgcaccacctcaatttggtaagtattggtaaggttagcgaaatc
atcacccaaatgaaggaagaaggctttagcataaaaagagtgtggaaatcttcggggaag
ctctga
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integrated database retrieval system
