Pediococcus acidilactici: A4V11_09030
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Entry
A4V11_09030 CDS
T04512
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
paci
Pediococcus acidilactici
Pathway
paci03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
paci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A4V11_09030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paci03400
]
A4V11_09030
DNA repair and recombination proteins [BR:
paci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A4V11_09030
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A4V11_09030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
nSTAND1
nSTAND3
AAA_22
RsgA_GTPase
AAA_21
AAA_25
AAA_33
DnaJ_CXXCXGXG
APS_kinase
AAA_15
AAA_18
AAA_23
Viral_helicase1
NACHT
cobW
PRK
DUF87
MeaB
NTPase_1
NB-ARC
Septin
MMR_HSR1
T2SSE
Motif
Other DBs
NCBI-ProteinID:
AOW75159
LinkDB
All DBs
Position
1892414..1895257
Genome browser
AA seq
947 aa
AA seq
DB search
MVNDKIIIHGARAHNLKNIDVTIPKNKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLS
AYARQFLGQMDKPDVDSIDGLSPAISIDQKTTSKNPRSTVGTVTEINDYLRLLWARVGTP
VCPNDGTIITSQTVEQMVDRVMELPERTKVQIISPIVRAKKGQHKKVFASIKREGFVRVR
VDGETMDVEEVPELEKSKAHSIDVVIDRIVVKEGIHSRLFDSFEAALRLSKGYATADVIG
GDPILFSEHYACPICGFTVGELEPRLFSFNAPFGACPDCDGLGVKLEVDMDLVVPDQDKT
LREGALAPWNPISSQYYPKLLEQAAESFGIDMDTPFKDLPKDARQLILYGSKGKQFHFHY
ENDFGGVRDVDTEFEGVINNVNRRYQETNSDFTRDQMRSYMRELTCQTCHGYRLNRKARA
VKIAGQHIGEVSELPIDRCTAFFEKLNFSEQDTVIATPILKEIRDRLNFLRNVGLEYLTL
SRSARTLSGGEAQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLISSLKKMRDLGNT
LIVVEHDEDTMRAADYLIDIGPGAGENGGEVMAAGTPKQVERSRKSLTGQYLAGKKSIPV
PTERRDGNGLAIQLKGVQENNLKNIDVKFPLGKFIAVTGVSGSGKSTLVNMVLKRVLAQK
LNRNSEKPGKYKSVSGIKNIEKVINIDQTPIGRTPRSNPATYTSVFDDIRGLFAQTNEAK
LRGYTKGRFSFNVKGGRCEACKGDGILKIEMNFLPDVYVPCEVCHGTRYNSETLEVKYKG
KNIAEVLDMTVEEAAKFFAPIPKIARKLQTIIDVGLGYVHLGQSATTLSGGEAQRMKLAA
ELHKKANGKNFYILDEPTTGLHTDDIKRLLDVLQRLVDNGNTVLVIEHNLDVIKTADHLI
DLGPEGGDGGGQIVATGTPEEIAEVAESYTGQYLKPVLERDRKLQKK
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
ttggtaaatgataagattatcattcacggtgcgcgagcacataacttaaaaaatattgac
gttaccattccgaaaaataaattagtggtggtaactggtttatctggttcagggaagagt
tcgcttgctttcgatacgctatacgcggaggggcagcgccgttacgtggaaagtttatca
gcatacgctcggcaatttttaggccagatggacaaacccgacgtagattcgattgacgga
ttgagcccggcaatttcaattgaccaaaaaactacctcgaagaacccccggtccacggtg
ggaaccgttacggaaattaacgattacctgcgcttactctgggcgcgggtgggaactccc
gtctgtccaaacgacgggacgatcattactagccaaacggttgaacaaatggtggatcgg
gttatggaacttcccgaacgaactaaagtacaaattatctccccaatcgtgcgcgctaaa
aaagggcaacataaaaaggtgtttgctagcatcaagcgggaaggttttgtgcgggttcgg
gttgatggtgaaaccatggatgttgaagaagttccggaattagaaaagagcaaggcccat
tccatcgacgttgtcattgaccgcattgtggttaaggaggggattcattcccgactcttt
gactcatttgaagcggctttacgattaagtaaaggatacgcgaccgccgatgtgattggc
ggagaccccattctattttcagaacactacgcttgcccaatttgtggatttacggtggga
gagttggaaccgcggttgttttcgtttaacgctccgtttggtgcctgcccagattgtgac
gggctcggggttaaactggaagttgatatggatttagtagttcctgatcaagataaaacg
ttgcgggaaggggctttggctccttggaatccaattagctcccagtattatccaaaatta
ctggaacaggcggcggaaagttttggcatcgatatggacacgccgttcaaggacctaccg
aaggatgcacggcaactaattttatacggatccaagggaaaacaattccattttcattac
gaaaatgactttggaggagtgcgggatgttgataccgaatttgaaggggtcattaataat
gtcaaccgccgttatcaagaaactaacagtgacttcacgcgtgaccaaatgcggtcatac
atgcgggagttaacttgtcaaacttgtcacggttatcgtcttaatcggaaggcgcgggcg
gttaagattgccggtcaacacattggtgaggtttctgaattaccaatcgaccggtgtacg
gccttttttgagaaacttaatttttcggaacaagacaccgtcattgcaacgccaattttg
aaggaaatccgggaccggttgaacttcttacggaacgtggggttggaatacctgacctta
agtcggtcggcacgaaccctctccggaggcgaagcgcaacggattcggttagctacccaa
attggttcgaacttatccggagtactatatatcctggacgaaccttcgattgggttgcat
caacgggataacgatcgcttgattagttccttgaaaaagatgcgtgatctcggcaacacc
ttgattgtcgtagaacatgacgaggataccatgcgggcagcggactatttgatcgatatt
ggtccaggtgccggagaaaatggtggcgaagtaatggccgcagggactcccaaacaggtt
gaacgcagtcgtaaatcgcttaccggacaatatttagctggtaagaagtcgattccggtc
cctactgaacggcgggatggtaacggcttggcaattcaactaaagggcgttcaagaaaac
aacttgaaaaacattgacgtgaagttcccattaggaaagtttattgccgttaccggagtt
tcgggatccggtaagtctaccctggtaaacatggtgttgaaacgagttttggcacaaaaa
cttaaccgaaattcggaaaagcctggtaagtataagtcggttagcggaatcaagaacatt
gaaaaggttattaacattgaccaaaccccaattggacggactccccggagtaatccggca
acttacacgagtgtgtttgatgatattcgcggactgtttgcccaaactaacgaagctaag
ctacgtggatacacaaagggccgctttagctttaacgtaaagggcggtcgttgtgaagca
tgtaagggtgacggaattctgaagattgaaatgaacttcttgccggacgtttacgttcct
tgtgaagtatgtcatggcacccggtacaattctgaaactttagaagttaagtataagggg
aagaacatcgcggaagttttggatatgaccgttgaagaagccgctaagttctttgcgcca
attcctaaaattgcccgcaagcttcaaaccatcattgacgttgggttaggatacgtgcat
ttagggcaatccgcaactaccctttctgggggcgaagcgcaacggatgaagttagctgct
gaattgcataaaaaagctaacggaaaaaacttctatattttagacgaaccaactaccggg
ttgcatactgatgacattaagcggttgttagatgttttacaacgcctagtggataatggc
aacactgtcttggtaattgaacataatttagacgttattaaaacagcagatcacctaatt
gatttaggaccagaaggcggcgacggtggcggacaaatcgtggctaccggaactcccgaa
gaaattgcggaagtggccgaaagctatacgggtcaatatttgaaaccagttttagaacga
gatcgcaagctacagaaaaagtaa
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