Paenibacillus sp. CAA11: DCC85_01010
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Entry
DCC85_01010 CDS
T10401
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pacl Paenibacillus sp. CAA11
Pathway
pacl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pacl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DCC85_01010 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pacl03019
]
DCC85_01010 (rnr)
03016 Transfer RNA biogenesis [BR:
pacl03016
]
DCC85_01010 (rnr)
Enzymes [BR:
pacl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DCC85_01010 (rnr)
Messenger RNA biogenesis [BR:
pacl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DCC85_01010 (rnr)
Transfer RNA biogenesis [BR:
pacl03016
]
Prokaryotic type
tRNA degradation factors
DCC85_01010 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_HELZ2
OB_Dis3
OB_RNR_1st
S1_RRP5
TFA2_Winged_2
TFIIE_beta
T6SS_Tle1-like_cat
Motif
Other DBs
NCBI-ProteinID:
AWB42945
LinkDB
All DBs
Position
199260..201872
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AA seq
870 aa
AA seq
DB search
MITESTLLDFMRETAYKPMTYQELEEHFQIKDASEFKEFLKLLNRLEQEGKILLTRTQRY
GVPERMDLVRGRLQAHAKGFAFLIPEDREHPDVYIHANDLKSAMNGDTVLVRVSARSVAG
GKLEGEVVRIVTRAVTQVVGVFQHQETYGFVVPDDKRINRDIFIPGDKFGGAVEGEKVVV
RIVNYPEGRAAAEGEVIEILGHKDDPGVDILSIIRKHQLPEAFPDEVMEEAQAVPDTIDQ
DEIVRQGRRDLRDKVIVTIDGEDAKDLDDAVNVERLPNGNYRLGVHIADVGYYVQEKSQL
DQEAYNRGCSVYLVDRVIPMLPHRLSNGICSLNPKVDRFTLSCEMEFNEHMKVVKHDVFT
SVIRTKERMTYTNVRKILQDEDPEVTERYSDLVENFKDMRDLALKLRANRMRRGAVDFDF
EESKVIVDETGKAVDIVKRERSIAEQIIEEFMLAANETVAEHFHWLKVPFIYRIHEDPDP
EKLMNFMAFAANFGYSVKGKGNSIHPRALQTLLEDIQGTKEQTVISTMMLRSMKQAKYDA
ESTGHFGLAAEFYTHFTSPIRRYPDLVIHRVIREVIENGGTLPADRQEYLASRMKDIAQQ
SSERERVAVEAERDTEQLKKAEFMLDKVGEEFPGIISSVTSFGMFIELENTVEGLIRLSA
LTDDYYHFHEQHMALIGERTSKIFRIGDEVKIRVARVNMDDHTIDFEMVDMKPRSREDRP
RGGGGGGRGKAGRSKAGAGEAVFAGGGKRGKKKRGAGAAAAGAEPRKGKGGRSADKAPAA
AKPAAPSFGFGSGKGGYASGSPEGYSRDGGAGAPGGGSRRKKTSASGIFNAAGDGGGAAG
EGAPRKKRNKGGRGKGAKNNATAAFVRKKK
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgattacagaatcaacattgcttgatttcatgcgggagaccgcttataaaccaatgact
tatcaggagttagaggagcattttcagattaaggacgcttcggagttcaaggagttcctc
aagcttctcaacagattggagcaggaggggaaaatcctgcttacccgcacacagcgctac
ggcgtgccagagcgtatggacctggtgcggggacgcctgcaggctcatgccaagggcttt
gccttcttgattcccgaggatcgcgagcatccggatgtctatatccatgcgaacgatttg
aagagcgccatgaacggagataccgttctagtgcgcgtcagcgccagaagtgttgccgga
ggcaagctcgaaggagaggttgttcgtattgtaacccgggccgttactcaggttgttgga
gtatttcagcatcaagagacctatggctttgtcgtgccggatgataagcggattaaccgg
gatatctttattccgggtgataagtttggaggcgcggtcgaaggggagaaggtcgttgtc
cggatcgttaactatccggagggacgagcggcggcagaaggagaagttattgaaattcta
ggtcataaggatgacccgggtgtagatattctctccattattcgcaagcaccagctgccg
gaggctttccccgatgaagtcatggaggaggcacaagctgttcctgatacgattgaccaa
gacgagattgtaaggcagggacggcgtgatctgcgcgacaaggtgatcgtgaccattgac
ggtgaagatgctaaggacctggatgacgcggtcaacgtggagcggctgccgaacgggaat
taccgtcttggtgtgcatattgccgatgtaggctactatgtgcaggagaaatcgcagctt
gaccaggaagcctataatcggggctgcagtgtctacttggtagaccgggtgatcccgatg
cttccgcatcgcttgtccaacggcatatgcagcttgaatccgaaggtggaccgttttacc
ctgtcctgtgagatggagtttaacgagcatatgaaggtcgtgaagcacgacgtcttcacc
agcgtaattcggaccaaggagcggatgacgtatacaaatgtccgcaaaatccttcaggat
gaagatccggaagtgactgagcgttatagtgatctggtggagaacttcaaggacatgcgc
gacctggcgctgaagctccgggcgaaccggatgcgccgcggggcggttgacttcgacttc
gaggaatccaaggtcattgtggacgagacgggaaaagcggtcgacattgtgaagcgcgag
cgctccattgctgagcagattattgaagagttcatgctggcagctaacgagacggtggcg
gagcatttccactggctgaaggttcctttcatttaccggattcacgaggacccggatccc
gagaagctgatgaactttatggcctttgcggccaactttggctatagcgtgaagggtaaa
ggcaactctattcatccgcgggccttgcagaccttattggaggacattcaagggacaaag
gaacagacggtgatcagcacgatgatgctgagatcgatgaagcaggcgaaatatgatgct
gagagcaccggccactttgggctggcagcggagttctatacgcacttcacctcgccaatt
cgccggtatcctgaccttgtgatccatcgggtgatccgtgaggtgatcgagaatggcggg
acactgcctgcggatcgtcaggaatatttggcgagtcgtatgaaggacattgcgcagcaa
tcgtccgagcgggaacgcgtcgccgttgaagccgaacgggatacggagcagctgaagaag
gcggagttcatgctggacaaagtcggcgaagaattcccggggattatcagcagcgtgaca
agcttcggtatgttcatcgaactggaaaataccgtcgaaggcttgattcgtctcagtgcc
ttaaccgacgactattatcacttccatgagcagcatatggcgctcatcggggagcgcacg
tcgaagatcttccggatcggagacgaagtgaagatccgcgtggcgcgcgtaaatatggac
gaccataccatcgacttcgagatggtcgacatgaagccgcgcagccgggaggatcggccg
cgcggaggcggcggaggcggccggggcaaggccggccgtagcaaagccggcgcgggcgag
gcggtcttcgccggcggcggcaagcgcggcaagaagaagcgcggcgctggagccgccgcg
gcgggtgctgagccgcgcaagggcaaaggcgggcgcagcgccgacaaggcgcctgctgcc
gcgaagccggccgcgccgagcttcggcttcggcagcggcaagggcggctacgccagcggc
tcgcccgagggctactcgcgcgacggcggggccggtgcgccgggcggcggatcgcgccgc
aagaagacgtcggcgagcggcatcttcaacgccgccggtgatggaggcggcgcagcgggt
gagggtgcgccgcgcaagaagcgcaacaagggcggccgaggcaagggcgcgaagaataac
gcgaccgccgcttttgttcgcaagaagaaatag
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