Paenibacillus sp. CAA11: DCC85_03705
Help
Entry
DCC85_03705 CDS
T10401
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pacl Paenibacillus sp. CAA11
Brite
KEGG Orthology (KO) [BR:
pacl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pacl03009
]
DCC85_03705
Enzymes [BR:
pacl01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
DCC85_03705
Ribosome biogenesis [BR:
pacl03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
DCC85_03705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
MTS
Methyltransf_15
PrmA
Cons_hypoth95
TRM5-TYW2_MTfase
Methyltransf_11
UPF0020
Methyltransf_32
PCMT
Methyltransf_12
N6_N4_Mtase
Methyltrans_SAM
OST-HTH
RrnaAD
Motif
Other DBs
NCBI-ProteinID:
AWB43414
UniProt:
A0A2S0U6J5
LinkDB
All DBs
Position
836007..837599
Genome browser
AA seq
530 aa
AA seq
DB search
MNKQRSGRPAGGRGAAGRGRGQAAGRGQRAAAAEMNAPVAKNDELELEIIGMNHDGEGVG
RADGYTLFVAGALPGERTRVRVLKTKKQYGYAKLLDVLEASPDRVAAPCPIYDQCGGCQL
QHLSYAGQLAWKRQHVVDALERIGKLRVAAPGAGAAGGGASGAAAGRADAAATAGDARDG
DAAPMEGGIVVRDTLGMAEPWRYRNKAQVPIGVAEGGLIGGFYARGSHRIIDMETCLIQH
EHNDEVVARVKEIGRSLGIHAYNEETGRGLLRHVVVKKAFRTGEMMLVLVTNGRDIPHAD
AWIGLIREQIPHVASICQNVNTKQTNVIFGDETRVLWGRDVIYDYIGDVQFAISARSFYQ
VNPVQTEVLYGKTVEYAGLTGKETVIDAYCGIGTISLFLAQHADQVYGVEIVKEAIEDAR
SNAELNGMKNVQFEVGASEDVIPRWKEQGIEADVIVVDPPRKGCDPRLLETILEMKPERV
VYVSCNPSTLARDLRVLEDGGYKTVEVQPVDMFPHTVHVECCSLLVRKDN
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgaataagcaacgcagcggcaggccggcaggcggaagaggagcagcaggccgtggccgc
ggacaggccgcggggcgcgggcagagagcagctgccgcagaaatgaatgcacccgtcgcg
aagaacgacgagctggagcttgagatcatcgggatgaatcacgatggagaaggggtaggc
cgcgcagatggctataccctgtttgtagcgggcgcattgccgggcgagcgcacgcgggtg
cgcgtgctcaagacgaagaagcagtatggctatgccaagctgctggacgtgctggaggcg
agcccggaccgcgtggccgcgccgtgcccgatctatgatcagtgcggcggctgtcagctg
cagcacctgagctatgccgggcagctggcctggaagcggcagcacgtcgtagacgcgctg
gagcggatcgggaagctgcgggtggctgcgccgggtgctggcgcagctggtgggggtgct
tcaggtgcagctgctggacgtgcagatgcggcggcaactgctggagatgcgcgagatggg
gatgctgcccctatggagggcggcatcgtggtgcgggacacgcttggcatggctgagcct
tggcgctaccgcaacaaggcacaggtgccgatcggcgtcgccgaaggcggactgatcggc
ggattctacgcgcgcggcagtcaccggatcatcgacatggagacctgtctgatccagcat
gagcacaacgacgaggtcgttgcgcgcgtgaaggaaattgggcggagcttagggatccac
gcctacaacgaagagaccgggcgcggtctgcttcgccacgttgtggtgaagaaggcgttc
cgcaccggcgagatgatgctcgtcctggtcacgaacggacgagacatcccgcatgcagat
gcctggatcgggctcattcgtgagcagatcccgcatgtggccagcatctgccagaacgtg
aacacgaagcagacgaacgtcatcttcggcgatgagacccgcgtcctgtggggacgcgat
gtcatctatgattatattggcgatgtgcagttcgccatctcggcccgctcgttctaccag
gtcaacccggtgcagaccgaggtactttatggcaagacggtcgagtacgccgggcttacc
gggaaagagaccgtcatcgatgcctactgcggcatcgggacgatctcgctgttcttggcg
cagcatgccgaccaggtgtacggcgtcgagatcgtcaaggaagcgatcgaggatgcgcgg
agcaatgccgagctgaacgggatgaagaacgttcagttcgaggtcggcgcttccgaggac
gttatcccgcgctggaaggagcagggcatcgaggcggatgtgatcgttgtcgatccgccg
cgcaagggctgcgacccgcgcctgctggagacgatcctcgaaatgaagccggagcgggtg
gtgtatgtgagctgcaacccgagcacgctggcacgcgatctgcgcgtgttggaggacggc
gggtacaagacggtggaggtgcagccggtggatatgttcccgcatacggtgcatgtagag
tgttgctcactgttggtgcggaaggacaattaa
DBGET
integrated database retrieval system
